RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 KRTAP10-9P60411 292 aa17.78■□□□□ 0.44
SMC4-221ENST00000489573 ERVFRD-1P60508 538 aa17.78■□□□□ 0.44
SMC4-221ENST00000489573 C5orf30Q96GV9 206 aa17.78■□□□□ 0.44
SMC4-221ENST00000489573 TP53RKQ96S44 253 aa17.78■□□□□ 0.44
SMC4-221ENST00000489573 GPHA2Q96T91 129 aa17.78■□□□□ 0.44
SMC4-221ENST00000489573 IFI27L2Q9H2X8 130 aa17.78■□□□□ 0.44
SMC4-221ENST00000489573 NBPF19A0A087WUL8 3843 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 AKAP6Q13023 2319 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 LOC105371242A0A075B767 164 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 H0Y980 276 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 LIPFP07098 398 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 HLA-GP17693 338 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 GPR12P47775 334 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 GNG10P50151 68 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 ZNF134P52741 427 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 Q3ZCU0 254 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 CT45A1Q5HYN5 189 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 OR5M8Q8NGP6 311 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 CT45A3Q8NHU0 189 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 SDHAF2Q9NX18 166 aa17.77■□□□□ 0.44
SMC4-221ENST00000489573 B3GALNT1O75752 331 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 SIX6O95475 246 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 RBP4P02753 201 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 F2RP25116 425 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 LIAT1Q6ZQX7 453 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 OR51H1Q8NH63 302 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 GLYATL2Q8WU03 294 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 DMRTB1Q96MA1 342 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 TMEM222Q9H0R3 208 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 SESN1Q9Y6P5 492 aa17.76■□□□□ 0.43
SMC4-221ENST00000489573 RNF212BA8MTL3 300 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 CCSO14618 274 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 GIPP09681 153 aaPredicted RBP17.75■□□□□ 0.43
SMC4-221ENST00000489573 IGHV1-8P0DP01 117 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 H2BFSP57053 126 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 DSCR9P59020 149 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 LMO4P61968 165 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 SRPXP78539 464 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 EIF4EBP1Q13541 118 aaPredicted RBP17.75■□□□□ 0.43
SMC4-221ENST00000489573 DCAF12L2Q5VW00 463 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 LGI3Q8N145 548 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 C11orf42Q8N5U0 333 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 MSI2Q96DH6 328 aaKnown RBP17.75■□□□□ 0.43
SMC4-221ENST00000489573 CHIAQ9BZP6 476 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 RAB18Q9NP72 206 aa17.75■□□□□ 0.43
SMC4-221ENST00000489573 A0A1W2PPE3 182 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 KIAA1324LA8MWY0 1029 aaPredicted RBP17.74■□□□□ 0.43
SMC4-221ENST00000489573 VWC2LB2RUY7 222 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 OR2A4O95047 310 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 SLC25A48Q6ZT89 311 aaKnown RBP17.74■□□□□ 0.43
SMC4-221ENST00000489573 LRTM2Q8N967 370 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 OR2A7Q96R45 310 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 LIN7CQ9NUP9 197 aaKnown RBP17.74■□□□□ 0.43
SMC4-221ENST00000489573 PIPOXQ9P0Z9 390 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 GAB2Q9UQC2 676 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 MALRD1Q5VYJ5 2156 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 A0A087X0M5 115 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 A0A1B0GX30 115 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 A8MXK9 166 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 UCP1P25874 307 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 CATR1Q13166 79 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 BTNL3Q6UXE8 466 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 ZNF66Q6ZN08 573 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.74■□□□□ 0.43
SMC4-221ENST00000489573 ASB13Q8WXK3 278 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 BEX4Q9NWD9 120 aaPredicted RBP17.74■□□□□ 0.43
SMC4-221ENST00000489573 ONECUT1Q9UBC0 465 aa17.74■□□□□ 0.43
SMC4-221ENST00000489573 hCG_1809904A0A1W2PP81 198 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 A0A1W2PPE2 198 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 A0A1W2PR64 198 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 A0A1W2PRV1 198 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 ADAP1O75689 374 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 RAP2BP61225 183 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 TMEM56Q96MV1 263 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 HSD17B10Q99714 261 aaKnown RBP17.73■□□□□ 0.43
SMC4-221ENST00000489573 TMEM56-RWDD3S4R434 201 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 DCHS2Q6V1P9 2916 aa17.73■□□□□ 0.43
SMC4-221ENST00000489573 USP9YO00507 2555 aaPredicted RBP17.72■□□□□ 0.43
SMC4-221ENST00000489573 FAM25EA8MYX2 175 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 RAB29O14966 203 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 HOXB5P09067 269 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 ZNF16P17020 682 aaPredicted RBP17.72■□□□□ 0.43
SMC4-221ENST00000489573 ZFP36P26651 326 aaKnown RBP17.72■□□□□ 0.43
SMC4-221ENST00000489573 ZFP69Q49AA0 526 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 HIST2H2BCQ6DN03 193 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 GSG1LQ6UXU4 331 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 LYG1Q8N1E2 194 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 C8orf31Q8N9H6 132 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 LHFPL5Q8TAF8 219 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 C18orf12Q96KH6 178 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 PDCD10Q9BUL8 212 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 TMEM133Q9H2Q1 129 aa17.72■□□□□ 0.43
SMC4-221ENST00000489573 METTL8Q9H825 291 aaKnown RBP17.72■□□□□ 0.43
SMC4-221ENST00000489573 YLPM1P49750 1951 aaKnown RBP17.72■□□□□ 0.43
SMC4-221ENST00000489573 IGHV4-30-2A0A087WSY4 118 aa17.71■□□□□ 0.43
SMC4-221ENST00000489573 C5orf51A6NDU8 294 aa17.71■□□□□ 0.43
SMC4-221ENST00000489573 SMLR1H3BR10 107 aa17.71■□□□□ 0.43
SMC4-221ENST00000489573 M0R1W7 72 aa17.71■□□□□ 0.43
SMC4-221ENST00000489573 ENSAO43768 121 aaKnown RBP17.71■□□□□ 0.43
SMC4-221ENST00000489573 DNASE1P24855 282 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms