RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 KCTD7Q96MP8 289 aa10.99□□□□□ -0.65
SYNE1-226ENST00000488376 HSPB9Q9BQS6 159 aa10.99□□□□□ -0.65
SYNE1-226ENST00000488376 AGMATQ9BSE5 352 aa10.99□□□□□ -0.65
SYNE1-226ENST00000488376 C11orf54Q9H0W9 315 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-226ENST00000488376 RNF150Q9ULK6 438 aa10.99□□□□□ -0.65
SYNE1-226ENST00000488376 WNK1Q9H4A3 2382 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 CMYA5Q8N3K9 4069 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 TRDCB7Z8K6 153 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 TXNL1O43396 289 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 RGS11O94810 467 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 GSTT2P0CG29 244 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 GSTT2BP0CG30 244 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 IGSF11Q5DX21 431 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 TPRA1Q86W33 373 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 NDUFA11Q86Y39 141 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 FAM71E2Q8N5Q1 922 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 YIPF6Q96EC8 236 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 S1PR3Q99500 378 aa10.98□□□□□ -0.65
SYNE1-226ENST00000488376 SERPINE3A8MV23 424 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 HSPA12AO43301 675 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 WIPF1O43516 503 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 TNFAIP8O95379 198 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 IGHG2P01859 326 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 CT45A6P0DMU7 189 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 CT45A5P0DMU8 189 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 CT45A7P0DMV0 189 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 ZBTB25P24278 435 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 GPR12P47775 334 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 FAM131AQ6UXB0 335 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 C18orf65Q6ZTR6 163 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 SLC35E3Q7Z769 313 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 DRAXINQ8NBI3 349 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-226ENST00000488376 PTX4Q96A99 478 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 R3HDM4Q96D70 268 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 SLC25A38Q96DW6 304 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 C5orf30Q96GV9 206 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 ABCG5Q9H222 651 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 RDH8Q9NYR8 311 aa10.97□□□□□ -0.65
SYNE1-226ENST00000488376 TCRBV4S1A1TA0A5B7 111 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 PSMB11A5LHX3 300 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 BET1O15155 118 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 FABP7O15540 132 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 OPN1MWP04001 364 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 OPN1MW2P0DN77 364 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 OPN1MW3P0DN78 364 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 ACTBP60709 375 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 LSM3P62310 102 aaKnown RBP10.96□□□□□ -0.65
SYNE1-226ENST00000488376 DEFA6Q01524 100 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 CDNFQ49AH0 187 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 IDNKQ5T6J7 187 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 LCNL1Q6ZST4 164 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 NUDCD2Q8WVJ2 157 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 CABLES2Q9BTV7 478 aa10.96□□□□□ -0.65
SYNE1-226ENST00000488376 LIN7CQ9NUP9 197 aaKnown RBP10.96□□□□□ -0.65
SYNE1-226ENST00000488376 A0A087WXM4 84 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 METTL21EPA6NDL7 271 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 TMEM235A6NFC5 223 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 TRIM64CA6NLI5 447 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 G3V4G9 280 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 RAB29O14966 203 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 SSX5O60225 188 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 ARFRP1Q13795 201 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 MMDQ15546 238 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 KHDC1LQ5JSQ8 128 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 STPG2Q8N412 459 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 OR4A4PQ8NGN8 299 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 ZNF107Q9UII5 783 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-226ENST00000488376 MGAT4AQ9UM21 535 aa10.95□□□□□ -0.66
SYNE1-226ENST00000488376 TRBV6-7A0A0A0MS04 114 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 H0YJW9 148 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 ITGB1BP1O14713 200 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 AIREO43918 545 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 SMIM18P0DKX4 95 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 RANBP1P43487 201 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 MRPS15P82914 257 aaKnown RBP10.94□□□□□ -0.66
SYNE1-226ENST00000488376 ZNF260Q3ZCT1 412 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 ZNF383Q8NA42 475 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 OR4X2Q8NGF9 303 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 RASL11BQ9BPW5 248 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.94□□□□□ -0.66
SYNE1-226ENST00000488376 RHBDL2Q9NX52 303 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 PIPOXQ9P0Z9 390 aa10.94□□□□□ -0.66
SYNE1-226ENST00000488376 OR8U9P0C7N5 309 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 PTHLHP12272 177 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 RPS19P39019 145 aaKnown RBP10.93□□□□□ -0.66
SYNE1-226ENST00000488376 HACD4Q5VWC8 232 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 FAM71F2Q6NXP2 309 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 OR8H1Q8NGG4 311 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 OR8U1Q8NH10 309 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 CHPT1Q8WUD6 406 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 EDARADDQ8WWZ3 215 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 ST6GALNAC5Q9BVH7 336 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 TOLLIPQ9H0E2 274 aa10.93□□□□□ -0.66
SYNE1-226ENST00000488376 TSSC4Q9Y5U2 329 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-226ENST00000488376 AP4M1O00189 453 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 NBR2O15453 112 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 IGKV1-16P04430 117 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 SOX6P35712 828 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 TALDO1P37837 337 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 NDPQ00604 133 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms