RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ZNF816Q0VGE8 651 aaPredicted RBP15.1■□□□□ 0.01
VIM-206ENST00000487938 RCC1LQ96I51 464 aaKnown RBP15.1■□□□□ 0.01
VIM-206ENST00000487938 GMPPAQ96IJ6 420 aaPredicted RBP15.1■□□□□ 0.01
VIM-206ENST00000487938 CHD3Q12873 2000 aaKnown RBP15.1■□□□□ 0.01
VIM-206ENST00000487938 CD55P08174 381 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 RAC2P15153 192 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 EIF2S3P41091 472 aaKnown RBP15.1■□□□□ 0.01
VIM-206ENST00000487938 GLIPR1P48060 266 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 FAM90A2PQ658T7 463 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 BEND4Q6ZU67 534 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 SLC35E3Q7Z769 313 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 KLF14Q8TD94 323 aaPredicted RBP15.1■□□□□ 0.01
VIM-206ENST00000487938 WDR61Q9GZS3 305 aaKnown RBP15.1■□□□□ 0.01
VIM-206ENST00000487938 OR2D2Q9H210 308 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 RBKSQ9H477 322 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 KCNIP1Q9NZI2 227 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 CACNA1DQ01668 2161 aa15.1■□□□□ 0.01
VIM-206ENST00000487938 UBE2L5PA0A1B0GUS4 154 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 CLDN1O95832 211 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 BCL2P10415 239 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 NDUFA6P56556 154 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 TGFBR3Q03167 851 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 MBD3L1Q8WWY6 194 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 GALMQ96C23 342 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 C5orf30Q96GV9 206 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 ZDHHC11Q9H8X9 412 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 CISD1Q9NZ45 108 aaKnown RBP15.09■□□□□ 0.01
VIM-206ENST00000487938 FZR1Q9UM11 496 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 IQCF6A8MYZ5 107 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 C12orf77C9JDV5 145 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 HOXB1P14653 301 aaPredicted RBP15.09■□□□□ 0.01
VIM-206ENST00000487938 RPS16P62249 146 aaKnown RBP15.09■□□□□ 0.01
VIM-206ENST00000487938 BTNL3Q6UXE8 466 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 TRIB1Q96RU8 372 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 ZNF251Q9BRH9 671 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 PSMG3Q9BT73 122 aaPredicted RBP15.09■□□□□ 0.01
VIM-206ENST00000487938 GSN-AS1Q9NRJ2 163 aa15.09■□□□□ 0.01
VIM-206ENST00000487938 LINC00587B1AMM8 73 aa15.08■□□□□ 0
VIM-206ENST00000487938 CYB5BO43169 146 aa15.08■□□□□ 0
VIM-206ENST00000487938 MLNRO43193 412 aa15.08■□□□□ 0
VIM-206ENST00000487938 PPIHO43447 177 aaKnown RBP15.08■□□□□ 0
VIM-206ENST00000487938 FABP1P07148 127 aa15.08■□□□□ 0
VIM-206ENST00000487938 IL2RGP31785 369 aa15.08■□□□□ 0
VIM-206ENST00000487938 SLC38A11Q08AI6 406 aa15.08■□□□□ 0
VIM-206ENST00000487938 Q6ZR03 302 aa15.08■□□□□ 0
VIM-206ENST00000487938 ZNF645Q8N7E2 425 aa15.08■□□□□ 0
VIM-206ENST00000487938 TPRX1Q8N7U7 411 aa15.08■□□□□ 0
VIM-206ENST00000487938 CNEP1R1Q8N9A8 125 aa15.08■□□□□ 0
VIM-206ENST00000487938 UFSP2Q9NUQ7 469 aa15.08■□□□□ 0
VIM-206ENST00000487938 PRR14LQ5THK1 2151 aa15.08■□□□□ 0
VIM-206ENST00000487938 TMEM30CPA0ZSE6 113 aa15.08■□□□□ 0
VIM-206ENST00000487938 CEBPZOSA8MTT3 80 aa15.08■□□□□ 0
VIM-206ENST00000487938 HMGB3O15347 200 aaKnown RBP15.08■□□□□ 0
VIM-206ENST00000487938 SOX8P57073 446 aa15.08■□□□□ 0
VIM-206ENST00000487938 LINC00205P59089 165 aa15.08■□□□□ 0
VIM-206ENST00000487938 TLE1Q04724 770 aa15.08■□□□□ 0
VIM-206ENST00000487938 TNFRSF9Q07011 255 aa15.08■□□□□ 0
VIM-206ENST00000487938 GABRA6Q16445 453 aa15.08■□□□□ 0
VIM-206ENST00000487938 C11orf53Q8IXP5 236 aa15.08■□□□□ 0
VIM-206ENST00000487938 TMEM178AQ8NBL3 297 aa15.08■□□□□ 0
VIM-206ENST00000487938 CA5BP1Q8WTZ4 195 aa15.08■□□□□ 0
VIM-206ENST00000487938 TAF15Q92804 592 aaKnown RBP eCLIP15.08■□□□□ 0
VIM-206ENST00000487938 CLN8Q9UBY8 286 aa15.08■□□□□ 0
VIM-206ENST00000487938 BDP1A6H8Y1 2624 aa15.08■□□□□ 0
VIM-206ENST00000487938 RNF212BA8MTL3 300 aa15.07■□□□□ 0
VIM-206ENST00000487938 J3QW42 95 aa15.07■□□□□ 0
VIM-206ENST00000487938 HBZP02008 142 aa15.07■□□□□ 0
VIM-206ENST00000487938 SERF2P84101 59 aa15.07■□□□□ 0
VIM-206ENST00000487938 TMEM41BQ5BJD5 291 aa15.07■□□□□ 0
VIM-206ENST00000487938 OR10G4Q8NGN3 311 aa15.07■□□□□ 0
VIM-206ENST00000487938 MRGPRDQ8TDS7 321 aa15.07■□□□□ 0
VIM-206ENST00000487938 TCEAL7Q9BRU2 100 aa15.07■□□□□ 0
VIM-206ENST00000487938 SIRT7Q9NRC8 400 aa15.07■□□□□ 0
VIM-206ENST00000487938 PRAMEF6Q5VXH4 476 aa15.06■□□□□ 0
VIM-206ENST00000487938 DOK5Q9P104 306 aa15.06■□□□□ 0
VIM-206ENST00000487938 IGHV3-43A0A0B4J1X8 118 aa15.06■□□□□ 0
VIM-206ENST00000487938 MAP1LC3B2A6NCE7 125 aa15.06■□□□□ 0
VIM-206ENST00000487938 C17orf98A8MV24 154 aa15.06■□□□□ 0
VIM-206ENST00000487938 S1PR2O95136 353 aa15.06■□□□□ 0
VIM-206ENST00000487938 IGKV1D-33P01593 117 aa15.06■□□□□ 0
VIM-206ENST00000487938 IGKV1-33P01594 117 aa15.06■□□□□ 0
VIM-206ENST00000487938 IGHV3-43DP0DP04 118 aa15.06■□□□□ 0
VIM-206ENST00000487938 HOXA5P20719 270 aa15.06■□□□□ 0
VIM-206ENST00000487938 BRWD1-AS2P59051 145 aa15.06■□□□□ 0
VIM-206ENST00000487938 FIP1L1Q6UN15 594 aaKnown RBP15.06■□□□□ 0
VIM-206ENST00000487938 MAP1LC3BQ9GZQ8 125 aa15.06■□□□□ 0
VIM-206ENST00000487938 HES4Q9HCC6 221 aa15.06■□□□□ 0
VIM-206ENST00000487938 SLC39A9Q9NUM3 307 aa15.06■□□□□ 0
VIM-206ENST00000487938 METRNQ9UJH8 293 aa15.06■□□□□ 0
VIM-206ENST00000487938 ASPMQ8IZT6 3477 aa15.06■□□□□ 0
VIM-206ENST00000487938 DSPP15924 2871 aaKnown RBP15.05■□□□□ 0
VIM-206ENST00000487938 CXorf65A6NEN9 183 aa15.05■□□□□ 0
VIM-206ENST00000487938 TRGC2P03986 189 aa15.05■□□□□ 0
VIM-206ENST00000487938 GABRA2P47869 451 aa15.05■□□□□ 0
VIM-206ENST00000487938 TNFSF10P50591 281 aa15.05■□□□□ 0
VIM-206ENST00000487938 CCL11P51671 97 aa15.05■□□□□ 0
VIM-206ENST00000487938 SRSF6Q13247 344 aaKnown RBP15.05■□□□□ 0
VIM-206ENST00000487938 TMEM14EPQ6UXP3 125 aa15.05■□□□□ 0
VIM-206ENST00000487938 FAM214BQ7L5A3 538 aa15.05■□□□□ 0
VIM-206ENST00000487938 RPP25LQ8N5L8 163 aaKnown RBP15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms