RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ABHD14BQ96IU4 210 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 MRPL20Q9BYC9 149 aaKnown RBP11.78□□□□□ -0.52
USP4-212ENST00000486549 MOB4Q9Y3A3 225 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 IGKV1D-8A0A087WSZ0 117 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 PEX14O75381 377 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 VDAC2P45880 294 aaPredicted RBP11.77□□□□□ -0.53
USP4-212ENST00000486549 CTF1Q16619 201 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 RPL39P5Q59GN2 51 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 UBE2NLQ5JXB2 153 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 OR2T10Q8NGZ9 312 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 EAF1Q96JC9 268 aaPredicted RBP11.77□□□□□ -0.53
USP4-212ENST00000486549 ST6GALNAC5Q9BVH7 336 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 C11orf54Q9H0W9 315 aaPredicted RBP11.77□□□□□ -0.53
USP4-212ENST00000486549 DIABLOQ9NR28 239 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 RDH8Q9NYR8 311 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 RNF150Q9ULK6 438 aa11.77□□□□□ -0.53
USP4-212ENST00000486549 AMY1AP04745 511 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 AMY2AP04746 511 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 DTYMKP23919 212 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 CD1BP29016 333 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 PITPNAQ00169 270 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 LSAMPQ13449 338 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 PNLIPRP3Q17RR3 467 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 ZNF833PQ6ZTB9 187 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 Q8N2B8 174 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 C11orf44Q8N8P7 122 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 OR10J5Q8NHC4 309 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 S1PR3Q99500 378 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 CITED1Q99966 193 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 GINS4Q9BRT9 223 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 CABLES2Q9BTV7 478 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 DCSTAMPQ9H295 470 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 SERTAD4Q9NUC0 356 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 PIPOXQ9P0Z9 390 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 COMMD3Q9UBI1 195 aa11.76□□□□□ -0.53
USP4-212ENST00000486549 A0A0A6YYH2 397 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 A6NJ64 397 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 NCBP2LA6PVI3 153 aaKnown RBP11.75□□□□□ -0.53
USP4-212ENST00000486549 M0QZ24 198 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 M0QZK8 103 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 ITGB1BP1O14713 200 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 RAB29O14966 203 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 SSX5O60225 188 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 MOSP00540 346 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 PTHLHP12272 177 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 EBI3Q14213 229 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 HIST2H2BDQ6DRA6 164 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 C11orf88Q6PI97 169 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 CLVS1Q8IUQ0 354 aaPredicted RBP11.75□□□□□ -0.53
USP4-212ENST00000486549 KCTD12Q96CX2 325 aaKnown RBP11.75□□□□□ -0.53
USP4-212ENST00000486549 S100A16Q96FQ6 103 aaKnown RBP11.75□□□□□ -0.53
USP4-212ENST00000486549 NABP2Q9BQ15 211 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 ABCG5Q9H222 651 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 AUNIPQ9H7T9 357 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 ZNF221Q9UK13 617 aa11.75□□□□□ -0.53
USP4-212ENST00000486549 TRBV6-7A0A0A0MS04 114 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 FCER2P06734 321 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 GPR12P47775 334 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 RORCP51449 518 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 SRSF7Q16629 238 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP4-212ENST00000486549 TMEM69Q5SWH9 247 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 TREML4Q6UXN2 200 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 GLDNQ6ZMI3 551 aaPredicted RBP11.74□□□□□ -0.53
USP4-212ENST00000486549 Q6ZS49 121 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 Q8N6K4 173 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 C5orf56Q8N8D9 126 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 ZNF251Q9BRH9 671 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 AGMATQ9BSE5 352 aa11.74□□□□□ -0.53
USP4-212ENST00000486549 MEIS3P1A6NDR6 274 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 FGF16O43320 207 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 XRCC3O43542 346 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 EIF4EP06730 217 aaKnown RBP11.73□□□□□ -0.53
USP4-212ENST00000486549 OR8U9P0C7N5 309 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 TET2Q6N021 2002 aaPredicted RBP11.73□□□□□ -0.53
USP4-212ENST00000486549 FAM71F2Q6NXP2 309 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 FAM131AQ6UXB0 335 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 GVQW1Q8N7I0 195 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 OR8U1Q8NH10 309 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 OR2D2Q9H210 308 aa11.73□□□□□ -0.53
USP4-212ENST00000486549 RBM7Q9Y580 266 aaKnown RBP11.73□□□□□ -0.53
USP4-212ENST00000486549 J3QRK9 145 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 DIRAS3O95661 229 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 CT45A6P0DMU7 189 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 CT45A5P0DMU8 189 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 CT45A7P0DMV0 189 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 RPL5P46777 297 aaKnown RBP11.72□□□□□ -0.53
USP4-212ENST00000486549 F2RL1P55085 397 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 TAS2R20P59543 309 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 H1FOOQ8IZA3 346 aaPredicted RBP11.72□□□□□ -0.53
USP4-212ENST00000486549 DRAXINQ8NBI3 349 aaPredicted RBP11.72□□□□□ -0.53
USP4-212ENST00000486549 ACOT12Q8WYK0 555 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 TOLLIPQ9H0E2 274 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 GHITMQ9H3K2 345 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 ANXA10Q9UJ72 324 aa11.72□□□□□ -0.53
USP4-212ENST00000486549 MGAM2Q2M2H8 2515 aa11.71□□□□□ -0.53
USP4-212ENST00000486549 H7C2Y5 167 aa11.71□□□□□ -0.53
USP4-212ENST00000486549 M0R1X1 148 aa11.71□□□□□ -0.53
USP4-212ENST00000486549 HPGDSO60760 199 aa11.71□□□□□ -0.53
USP4-212ENST00000486549 NOL3O60936 208 aaKnown RBP11.71□□□□□ -0.53
USP4-212ENST00000486549 NFYAP23511 347 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms