RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MND1Q9BWT6 205 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CST11Q9H112 138 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 Q9H521 79 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 BLOC1S6Q9UL45 172 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 VSIG4Q9Y279 399 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 LSM2Q9Y333 95 aaKnown RBP9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 FBXO7Q9Y3I1 522 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 NUBP2Q9Y5Y2 271 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 U3KQK5 164 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 A0A0A6YYD4 124 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TRAV41A0A0B4J266 112 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PTGES3LE9PB15 166 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SLC22A1O15245 554 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PROP1O75360 226 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RGS11O94810 467 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CDK1P06493 297 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR8U8P0C7N1 319 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CT45A6P0DMU7 189 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CT45A5P0DMU8 189 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CT45A7P0DMV0 189 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 BLVRBP30043 206 aaPredicted RBP9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ECI1P42126 302 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ZNF616Q08AN1 781 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ZNF260Q3ZCT1 412 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 LIN54Q6MZP7 749 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 C6orf201Q7Z4U5 140 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SVOPQ8N4V2 548 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 FAM89BQ8N5H3 189 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 MS4A15Q8N5U1 240 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR1N2Q8NGR9 330 aa9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ZNF256Q9Y2P7 627 aaPredicted RBP9.49□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TNCP24821 2201 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 HUWE1Q7Z6Z7 4374 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 FOXI3A8MTJ6 420 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 FCN1O00602 326 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SRMP19623 302 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RBM48Q5RL73 367 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ZNF660Q6AZW8 331 aaPredicted RBP9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR2AK2Q8NG84 335 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR5AN1Q8NGI8 311 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 KCNG3Q8TAE7 436 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 NEDD4LQ96PU5 975 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 NICN1Q9BSH3 213 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PARP12Q9H0J9 701 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 GHITMQ9H3K2 345 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PIPOXQ9P0Z9 390 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SLC23A1Q9UHI7 598 aa9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RRP15Q9Y3B9 282 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 H0YJW9 148 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RRHO14718 337 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RAB29O14966 203 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 UCHL1P09936 223 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TMEM50BP56557 158 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CX3CL1P78423 397 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 IRF3Q14653 427 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RPL39P5Q59GN2 51 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 GLT8D1Q68CQ7 371 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TMEM65Q6PI78 240 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CD200R1LQ6Q8B3 271 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ZNF429Q86V71 674 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 DCUN1D4Q92564 292 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PTX4Q96A99 478 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CNBD2Q96M20 576 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 GFI1Q99684 422 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RNF5Q99942 180 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TMEM59Q9BXS4 323 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TOLLIPQ9H0E2 274 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 LPAR5Q9H1C0 372 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 KCNK15Q9H427 330 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 DUSP21Q9H596 190 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PARP11Q9NR21 331 aa9.47□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CSMD3Q7Z407 3707 aa9.46□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR5H14A6NHG9 310 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ST8SIA5O15466 376 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 RGS10O43665 173 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 BPNT1O95861 308 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SNRPBP14678 240 aaKnown RBP9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SPHARQ15513 63 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 AKIRIN2Q53H80 203 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 FAM131AQ6UXB0 335 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TMEM91Q6ZNR0 172 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TCTEX1D1Q8N7M0 179 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 DLX4Q92988 240 aaPredicted RBP9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ALX4Q9H161 411 aaPredicted RBP9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 RIMS4Q9H426 269 aaPredicted RBP9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ABRACLQ9P1F3 81 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 STEAP1Q9UHE8 339 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 HSF4Q9ULV5 492 aa9.46□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 OVOL1O14753 267 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SOCS1O15524 211 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 RBBP9O75884 186 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CRHBPP24387 322 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 MC5RP33032 325 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 MED22Q15528 200 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ACSM6Q6P461 480 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ZNF562Q6V9R5 426 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 MOB1BQ7L9L4 216 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 PRSS48Q7RTY5 328 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 CEACAM19Q7Z692 300 aa9.45□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 IL1F10Q8WWZ1 152 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms