RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 I3L521 148 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 ST8SIA5O15466 376 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 RGS10O43665 173 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 NDUFA3O95167 84 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 LY86O95711 162 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 IGLV1-40P01703 118 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 CRHBPP24387 322 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 INSL3P51460 131 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 RUNX1Q01196 453 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 MED22Q15528 200 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 ECSCRQ19T08 205 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 C1orf100Q5SVJ3 147 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 FAM131AQ6UXB0 335 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 MOB1BQ7L9L4 216 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 LRRTM1Q86UE6 522 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 SVOPQ8N4V2 548 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 NPBQ8NG41 125 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 KCNG3Q8TAE7 436 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 SETD6Q8TBK2 473 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 RAB26Q9ULW5 256 aa15.37■□□□□ 0.05
COL9A3-210ENST00000472880 HTR2CP28335 458 aa15.36■□□□□ 0.05
COL9A3-210ENST00000472880 RAB9AP51151 201 aa15.36■□□□□ 0.05
COL9A3-210ENST00000472880 GNB1P62873 340 aa15.36■□□□□ 0.05
COL9A3-210ENST00000472880 KIAA0141Q14154 515 aaPredicted RBP15.36■□□□□ 0.05
COL9A3-210ENST00000472880 PLGLAQ15195 96 aa15.36■□□□□ 0.05
COL9A3-210ENST00000472880 HSD17B12Q53GQ0 312 aa15.36■□□□□ 0.05
COL9A3-210ENST00000472880 NICN1Q9BSH3 213 aa15.36■□□□□ 0.05
COL9A3-210ENST00000472880 TM2D1Q9BX74 207 aa15.36■□□□□ 0.05
COL9A3-210ENST00000472880 KCNK15Q9H427 330 aa15.36■□□□□ 0.05
COL9A3-210ENST00000472880 NBEAL2Q6ZNJ1 2754 aa15.35■□□□□ 0.05
COL9A3-210ENST00000472880 RAB29O14966 203 aa15.35■□□□□ 0.05
COL9A3-210ENST00000472880 NAPSAO96009 420 aa15.35■□□□□ 0.05
COL9A3-210ENST00000472880 UNC119Q13432 240 aa15.35■□□□□ 0.05
COL9A3-210ENST00000472880 ASPHD1Q5U4P2 390 aa15.35■□□□□ 0.05
COL9A3-210ENST00000472880 MINDY2Q8NBR6 621 aa15.35■□□□□ 0.05
COL9A3-210ENST00000472880 PLEKHJ1Q9NW61 149 aa15.35■□□□□ 0.05
COL9A3-210ENST00000472880 SLC23A1Q9UHI7 598 aa15.35■□□□□ 0.05
COL9A3-210ENST00000472880 A0A1W2PN81 502 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 OR5H14A6NHG9 310 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 CHRNA7P36544 502 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 NDPQ00604 133 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 RPL39P5Q59GN2 51 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 ZNF880Q6PDB4 577 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 PRSS48Q7RTY5 328 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 CEACAM19Q7Z692 300 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 OR6M1Q8NGM8 313 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 ABHD5Q8WTS1 349 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 CCDC90BQ9GZT6 254 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 FBXL15Q9H469 300 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 ISYNA1Q9NPH2 558 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 FOXA2Q9Y261 457 aaPredicted RBP15.34■□□□□ 0.05
COL9A3-210ENST00000472880 A3GALT2U3KPV4 340 aa15.34■□□□□ 0.05
COL9A3-210ENST00000472880 TMEM14DPA8MWL7 114 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 H7C2Y5 167 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 RRHO14718 337 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 OVOL1O14753 267 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 SLC22A1O15245 554 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 BPNT1O95861 308 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 SRMP19623 302 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 ZNF660Q6AZW8 331 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-210ENST00000472880 TCTEX1D1Q8N7M0 179 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 UFD1Q92890 307 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 ASCL2Q99929 193 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 RIMS4Q9H426 269 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-210ENST00000472880 WASHC3Q9Y3C0 194 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 FBXO7Q9Y3I1 522 aa15.33■□□□□ 0.04
COL9A3-210ENST00000472880 TENM3Q9P273 2699 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 GSTP1P09211 210 aaKnown RBP15.32■□□□□ 0.04
COL9A3-210ENST00000472880 CT45A6P0DMU7 189 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 CT45A5P0DMU8 189 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 CT45A7P0DMV0 189 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 MC5RP33032 325 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 CRIP2P52943 208 aaPredicted RBP15.32■□□□□ 0.04
COL9A3-210ENST00000472880 CX3CL1P78423 397 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 LIPKQ5VXJ0 399 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 GLDNQ6ZMI3 551 aaPredicted RBP15.32■□□□□ 0.04
COL9A3-210ENST00000472880 ZNF429Q86V71 674 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 EDARADDQ8WWZ3 215 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 DCUN1D4Q92564 292 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 ABHD14BQ96IU4 210 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 URM1Q9BTM9 101 aaKnown RBP15.32■□□□□ 0.04
COL9A3-210ENST00000472880 PARP12Q9H0J9 701 aaKnown RBP15.32■□□□□ 0.04
COL9A3-210ENST00000472880 ALX4Q9H161 411 aaPredicted RBP15.32■□□□□ 0.04
COL9A3-210ENST00000472880 GHITMQ9H3K2 345 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 BLOC1S6Q9UL45 172 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 SMAD5-AS1Q9Y6J3 95 aa15.32■□□□□ 0.04
COL9A3-210ENST00000472880 A0A0A6YYD4 124 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 H0YJW9 148 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 ITGB1BP1O14713 200 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 HSPA12AO43301 675 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 SAP30O75446 220 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 RBBP9O75884 186 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 UCHL1P09936 223 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 HSMCR30P0CW71 290 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 MAP2K4P45985 399 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 HLA-DRB3P79483 266 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 QRFPP83859 136 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 TMEM267Q0VDI3 215 aaPredicted RBP15.31■□□□□ 0.04
COL9A3-210ENST00000472880 TPBGQ13641 420 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 C19orf54Q5BKX5 351 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms