RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CCL24O00175 119 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 NBR2O15453 112 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 ELANEP08246 267 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 HSPA13P48723 471 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 CFHR3Q02985 330 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 RPL39P5Q59GN2 51 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 HES5Q5TA89 166 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 FAM131AQ6UXB0 335 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 FAM3DQ96BQ1 224 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 ARHGAP5-AS1Q96IT6 56 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 ABHD14BQ96IU4 210 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 RIMS4Q9H426 269 aaPredicted RBP12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 PARP11Q9NR21 331 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 PIPOXQ9P0Z9 390 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 OR1A1Q9P1Q5 309 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 V9GY05 133 aa12.31□□□□□ -0.44
CCDC88B-205ENST00000472524 TRBV6-6A0A0A6YYG2 114 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 FOXI3A8MTJ6 420 aaPredicted RBP12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 RAB29O14966 203 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 HSPA12AO43301 675 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 IGHG4P01861 327 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 IGF1P05019 195 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 TMEM50BP56557 158 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 TBCEQ15813 527 aaPredicted RBP12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 FAM71F2Q6NXP2 309 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 GLDNQ6ZMI3 551 aaPredicted RBP12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 ZNF367Q7RTV3 350 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 FAM89BQ8N5H3 189 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 CMSS1Q9BQ75 279 aaKnown RBP12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 MCRIP2Q9BUT9 160 aaKnown RBP12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 PECRQ9BY49 303 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 ACOT13Q9NPJ3 140 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 C12orf4Q9NQ89 552 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 KIAA1456Q9P272 454 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 BLOC1S6Q9UL45 172 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 HSF4Q9ULV5 492 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 WSB1Q9Y6I7 421 aa12.3□□□□□ -0.44
CCDC88B-205ENST00000472524 TMEM272A0A1B0GTI8 110 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 ATP6V0E1O15342 81 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 DENRO43583 198 aaKnown RBP12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 HLA-DRB1P01911 266 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 SCTP09683 121 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 OR5H8P0DN80 308 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 CEACAM6P40199 344 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 EGFEM1PQ0D2K5 195 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 PLA2G7Q13093 441 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 SSX1Q16384 188 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 C5orf64Q2M2E5 130 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 C2orf76Q3KRA6 126 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 RNF152Q8N8N0 203 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 OR56B1Q8NGI3 324 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 OR8U1Q8NH10 309 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 OR51J1Q9H342 316 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 Q9N2K0 584 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 DNAH9Q9NYC9 4486 aa12.29□□□□□ -0.44
CCDC88B-205ENST00000472524 IGHV7-81A0A0B4J1V7 117 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 G3V318 75 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 CT45A6P0DMU7 189 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 CT45A5P0DMU8 189 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 CT45A7P0DMV0 189 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 ZBTB25P24278 435 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 PSMB8P28062 276 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 CDX1P47902 265 aaPredicted RBP12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 OR10A3P58181 314 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 KIR2DS1Q14954 304 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 PLAC9Q5JTB6 97 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 NPBQ8NG41 125 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 EDARADDQ8WWZ3 215 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 C11orf54Q9H0W9 315 aaPredicted RBP12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 ZNF580Q9UK33 172 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 MGAT4AQ9UM21 535 aa12.28□□□□□ -0.44
CCDC88B-205ENST00000472524 OR5H14A6NHG9 310 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 H0YJW9 148 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 H7C2Y5 167 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 ITGB1BP1O14713 200 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 PDCD5O14737 125 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 LDLRAD4O15165 306 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 NDUFA3O95167 84 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 GSTP1P09211 210 aaKnown RBP12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 MYL9P24844 172 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 RANBP1P43487 201 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 PSMD7P51665 324 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 PLGLAQ15195 96 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 LIN54Q6MZP7 749 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 TMEM65Q6PI78 240 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 C4orf3Q8WVX3 66 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 FBXL15Q9H469 300 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 RAB22AQ9UL26 194 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 RNF150Q9ULK6 438 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 RAB26Q9ULW5 256 aa12.27□□□□□ -0.45
CCDC88B-205ENST00000472524 TENM3Q9P273 2699 aa12.26□□□□□ -0.45
CCDC88B-205ENST00000472524 TRAV41A0A0B4J266 112 aa12.26□□□□□ -0.45
CCDC88B-205ENST00000472524 SHISA3A0PJX4 238 aa12.26□□□□□ -0.45
CCDC88B-205ENST00000472524 RRHO14718 337 aa12.26□□□□□ -0.45
CCDC88B-205ENST00000472524 CD3GP09693 182 aa12.26□□□□□ -0.45
CCDC88B-205ENST00000472524 PPIFP30405 207 aaKnown RBP12.26□□□□□ -0.45
CCDC88B-205ENST00000472524 MRPS15P82914 257 aaKnown RBP12.26□□□□□ -0.45
CCDC88B-205ENST00000472524 NDPQ00604 133 aa12.26□□□□□ -0.45
CCDC88B-205ENST00000472524 ECSCRQ19T08 205 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms