RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 IGLV1-40P01703 118 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 ARSBP15848 533 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 CRHBPP24387 322 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 PSMA1P25786 263 aaKnown RBP12.72□□□□□ -0.37
COL9A3-208ENST00000469802 KIAA0141Q14154 515 aaPredicted RBP12.72□□□□□ -0.37
COL9A3-208ENST00000469802 P2RY14Q15391 338 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 C5orf64Q2M2E5 130 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 HDHD3Q9BSH5 251 aaPredicted RBP12.72□□□□□ -0.37
COL9A3-208ENST00000469802 URM1Q9BTM9 101 aaKnown RBP12.72□□□□□ -0.37
COL9A3-208ENST00000469802 OR51J1Q9H342 316 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 PLEKHJ1Q9NW61 149 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 PIPOXQ9P0Z9 390 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 AK3Q9UIJ7 227 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 RAB29O14966 203 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 ARL6IP5O75915 188 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 HSMCR30P0CW71 290 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 HLA-DRB3P79483 266 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 NDPQ00604 133 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 RPL39P5Q59GN2 51 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 C19orf54Q5BKX5 351 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 FAM131AQ6UXB0 335 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 PRSS48Q7RTY5 328 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 PLGRKTQ9HBL7 147 aa12.71□□□□□ -0.37
COL9A3-208ENST00000469802 CHMP1AQ9HD42 196 aaPredicted RBP12.71□□□□□ -0.37
COL9A3-208ENST00000469802 AK6Q9Y3D8 172 aaKnown RBP12.71□□□□□ -0.37
COL9A3-208ENST00000469802 OR5H14A6NHG9 310 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 G3V318 75 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 LDLRAD4O15165 306 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 CT45A6P0DMU7 189 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 CT45A5P0DMU8 189 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 CT45A7P0DMV0 189 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 LUMP51884 338 aaPredicted RBP12.7□□□□□ -0.38
COL9A3-208ENST00000469802 CRIP2P52943 208 aaPredicted RBP12.7□□□□□ -0.38
COL9A3-208ENST00000469802 TMEM50BP56557 158 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 DGCR2P98153 550 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 FABP5Q01469 135 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 RAB11BQ15907 218 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 OR5M8Q8NGP6 311 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 SETD6Q8TBK2 473 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 UBE2E2Q96LR5 201 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 MGLLQ99685 303 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 KLK15Q9H2R5 256 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 C12orf4Q9NQ89 552 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 PARP11Q9NR21 331 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 OR1A1Q9P1Q5 309 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 MGAT4AQ9UM21 535 aa12.7□□□□□ -0.38
COL9A3-208ENST00000469802 TRAV41A0A0B4J266 112 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 H0YJW9 148 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 I3L521 148 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 CALRP27797 417 aaKnown RBP12.69□□□□□ -0.38
COL9A3-208ENST00000469802 RAB25P57735 213 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 RUNX1Q01196 453 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 TBCEQ15813 527 aaPredicted RBP12.69□□□□□ -0.38
COL9A3-208ENST00000469802 ASPHD1Q5U4P2 390 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 LIN54Q6MZP7 749 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 C11orf87Q6NUJ2 197 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 ZNF491Q8N8L2 437 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 MINDY2Q8NBR6 621 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 OR5AN1Q8NGI8 311 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 EDARADDQ8WWZ3 215 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 PTX4Q96A99 478 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 ARHGAP5-AS1Q96IT6 56 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 ABHD14BQ96IU4 210 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 B9D2Q9BPU9 175 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 GHITMQ9H3K2 345 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 GNB4Q9HAV0 340 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 Q9N2K0 584 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 KIAA1456Q9P272 454 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 ZMAT5Q9UDW3 170 aaKnown RBP12.69□□□□□ -0.38
COL9A3-208ENST00000469802 FBXO7Q9Y3I1 522 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 WSB1Q9Y6I7 421 aa12.69□□□□□ -0.38
COL9A3-208ENST00000469802 RRHO14718 337 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 RAMP3O60896 148 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 PROP1O75360 226 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 ZBTB25P24278 435 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 MAP2K4P45985 399 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 CLDN12P56749 244 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 DCTN2Q13561 401 aaKnown RBP12.68□□□□□ -0.38
COL9A3-208ENST00000469802 DEFB121Q5J5C9 76 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 PLAC9Q5JTB6 97 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 VAX1Q5SQQ9 334 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 C9orf66Q5T8R8 295 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 GLDNQ6ZMI3 551 aaPredicted RBP12.68□□□□□ -0.38
COL9A3-208ENST00000469802 FAM3DQ96BQ1 224 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 PECRQ9BY49 303 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 CCDC90BQ9GZT6 254 aa12.68□□□□□ -0.38
COL9A3-208ENST00000469802 C11orf54Q9H0W9 315 aaPredicted RBP12.68□□□□□ -0.38
COL9A3-208ENST00000469802 IGKV1-6A0A0C4DH72 117 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 SOX15O60248 233 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 RBBP9O75884 186 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 SCTP09683 121 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 MC5RP33032 325 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 VEGFCP49767 419 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 SSX1Q16384 188 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 ZNF660Q6AZW8 331 aaPredicted RBP12.67□□□□□ -0.38
COL9A3-208ENST00000469802 OR11H1Q8NG94 326 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 OR56B1Q8NGI3 324 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 FBXL15Q9H469 300 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 ACOT13Q9NPJ3 140 aa12.67□□□□□ -0.38
COL9A3-208ENST00000469802 SCOCQ9UIL1 159 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms