RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 ARL6IP1Q15041 203 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 GUK1Q16774 197 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 SMIM21Q3B7S5 101 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 LYPD6Q86Y78 171 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 STX12Q86Y82 276 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 GVQW1Q8N7I0 195 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 ZNF565Q8N9K5 539 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 LINC01356Q8N9X3 169 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 UBAC2Q8NBM4 344 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 OR8B3Q8NGG8 313 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 OR8U1Q8NH10 309 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 OR51F2Q8NH61 342 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 LRRC29Q8WV35 223 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 SECTM1Q8WVN6 248 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 GTF3AQ92664 365 aaKnown RBP6.51□□□□□ -1.37
USP4-207ENST00000462673 EMG1Q92979 244 aaKnown RBP6.51□□□□□ -1.37
USP4-207ENST00000462673 OR8B2Q96RD0 313 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 PFDN5Q99471 154 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 URM1Q9BTM9 101 aaKnown RBP6.51□□□□□ -1.37
USP4-207ENST00000462673 TOLLIPQ9H0E2 274 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 SMDT1Q9H4I9 107 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 CNTD2Q9H8S5 307 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 UNKLQ9H9P5 680 aaKnown RBP6.51□□□□□ -1.37
USP4-207ENST00000462673 ZMAT3Q9HA38 289 aaKnown RBP6.51□□□□□ -1.37
USP4-207ENST00000462673 SPACA1Q9HBV2 294 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 GPR173Q9NS66 373 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 GPR132Q9UNW8 380 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 MRPS28Q9Y2Q9 187 aaKnown RBP6.51□□□□□ -1.37
USP4-207ENST00000462673 ROS1P08922 2347 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 ITPR2Q14571 2701 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 FBN2P35556 2912 aa6.51□□□□□ -1.37
USP4-207ENST00000462673 RTTNQ86VV8 2226 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 ELOA3CA0A087WX78 387 aaPredicted RBP6.5□□□□□ -1.37
USP4-207ENST00000462673 A0A1B0GW64 132 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 A0A1W2PPE3 182 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 NKX6-3A6NJ46 265 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 J3QT63 122 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 NDUFB3O43676 98 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 DEDDO75618 318 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 ADAP1O75689 374 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 CYB5R3P00387 301 aaPredicted RBP6.5□□□□□ -1.37
USP4-207ENST00000462673 TGFAP01135 160 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 IFNA2P01563 188 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 SEC11BP0C7V7 166 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 TMEM225BP0DP42 221 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 VSIG8P0DPA2 414 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 GNB3P16520 340 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 HNF1AP20823 631 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 RPL12P30050 165 aaKnown RBP6.5□□□□□ -1.37
USP4-207ENST00000462673 FCGR2CP31995 323 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 GNB2P62879 340 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 QRFPP83859 136 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 ZNF616Q08AN1 781 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 SCGB2A2Q13296 93 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 KIAA0141Q14154 515 aaPredicted RBP6.5□□□□□ -1.37
USP4-207ENST00000462673 KISS1Q15726 138 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 UBE2V2Q15819 145 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 TMEM249Q2WGJ8 235 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 ANKRD55Q3KP44 614 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 Q3ZCU0 254 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 MIDNQ504T8 468 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 LRRC10Q5BKY1 277 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 PRAMEF6Q5VXH4 476 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 TEX36Q5VZQ5 186 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 WDR82Q6UXN9 313 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 LHFPL1Q86WI0 220 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 KRTAP1-3Q8IUG1 177 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 SAXO1Q8IYX7 474 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 KCNG3Q8TAE7 436 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 PPP1R35Q8TAP8 253 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 NEIL1Q96FI4 390 aaPredicted RBP6.5□□□□□ -1.37
USP4-207ENST00000462673 NKX3-1Q99801 234 aaPredicted RBP6.5□□□□□ -1.37
USP4-207ENST00000462673 TMEM59Q9BXS4 323 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 ARV1Q9H2C2 271 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 C5orf66Q9H5L9 145 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 ZNF665Q9H7R5 613 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 PATZ1Q9HBE1 687 aaKnown RBP6.5□□□□□ -1.37
USP4-207ENST00000462673 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.5□□□□□ -1.37
USP4-207ENST00000462673 PDZD2O15018 2839 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 PLCE1Q9P212 2302 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 NAV2Q8IVL1 2488 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 ARFGEF3Q5TH69 2177 aa6.5□□□□□ -1.37
USP4-207ENST00000462673 SPG11Q96JI7 2443 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 SETXQ7Z333 2677 aaKnown RBP6.49□□□□□ -1.37
USP4-207ENST00000462673 NBPF19A0A087WUL8 3843 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 PPIAL4CA0A0B4J2A2 164 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 IGHV3-64DA0A0J9YX35 117 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 BTBD17A6NE02 478 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 SRRM5B3KS81 715 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 E5RGE8 158 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 AGPAT2O15120 278 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 TMPRSS2O15393 492 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 KCNAB3O43448 404 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 TGOLN2O43493 480 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 CD5LO43866 347 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 CA11O75493 328 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 NXPH2O95156 264 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 SFTPBP07988 381 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 WNT2P09544 360 aa6.49□□□□□ -1.37
USP4-207ENST00000462673 RPS2P15880 293 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms