RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 SLC23A1Q9UHI7 598 aa9.46□□□□□ -0.9
USP40-210ENST00000454354 TMEM272A0A1B0GTI8 110 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 TRDV1A0A1B0GX56 115 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 SHISA3A0PJX4 238 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 PDCD5O14737 125 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 RAB29O14966 203 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 ST8SIA5O15466 376 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 DENRO43583 198 aaKnown RBP9.45□□□□□ -0.9
USP40-210ENST00000454354 NDUFA3O95167 84 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 HLA-DRB1P01911 266 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 ELANEP08246 267 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 ACTBP60709 375 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 FOXE3Q13461 319 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 PLAC9Q5JTB6 97 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 UBE2UQ5VVX9 321 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 C8orf86Q6ZUL3 223 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 ZNF695Q8IW36 515 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 MRPL41Q8IXM3 137 aaKnown RBP9.45□□□□□ -0.9
USP40-210ENST00000454354 KLHL30-AS1Q8NEE0 82 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 SETD6Q8TBK2 473 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 P2RX4Q99571 388 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 CHCHD6Q9BRQ6 235 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 PARP12Q9H0J9 701 aaKnown RBP9.45□□□□□ -0.9
USP40-210ENST00000454354 GHITMQ9H3K2 345 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 AURKAIP1Q9NWT8 199 aaPredicted RBP9.45□□□□□ -0.9
USP40-210ENST00000454354 ZNF107Q9UII5 783 aaPredicted RBP9.45□□□□□ -0.9
USP40-210ENST00000454354 RAB22AQ9UL26 194 aa9.45□□□□□ -0.9
USP40-210ENST00000454354 IFITM5A6NNB3 132 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 NBR2O15453 112 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 IGHG4P01861 327 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 RPLP1P05386 114 aaKnown RBP9.44□□□□□ -0.9
USP40-210ENST00000454354 OR5H8P0DN80 308 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 SLC2A2P11168 524 aaPredicted RBP9.44□□□□□ -0.9
USP40-210ENST00000454354 ZBTB25P24278 435 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 MYL9P24844 172 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 MYCNOSP40205 109 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 PLA2G7Q13093 441 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 RPL39P5Q59GN2 51 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 HES5Q5TA89 166 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 NPBQ8NG41 125 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 MYOZ3Q8TDC0 251 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 EDARADDQ8WWZ3 215 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 PTX4Q96A99 478 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 RITA1Q96K30 269 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 CMSS1Q9BQ75 279 aaKnown RBP9.44□□□□□ -0.9
USP40-210ENST00000454354 GPR61Q9BZJ8 451 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 TOLLIPQ9H0E2 274 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 OR1A1Q9P1Q5 309 aa9.44□□□□□ -0.9
USP40-210ENST00000454354 IGKV1-6A0A0C4DH72 117 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 OR5H14A6NHG9 310 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 NUDT19A8MXV4 375 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 CT45A6P0DMU7 189 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 CT45A5P0DMU8 189 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 CT45A7P0DMV0 189 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 RAB3BP20337 219 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 RAB6AP20340 208 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 VDAC1P21796 283 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 CNTFRP26992 372 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 PSMB8P28062 276 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 CDX1P47902 265 aaPredicted RBP9.43□□□□□ -0.9
USP40-210ENST00000454354 OR10A3P58181 314 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 EGFEM1PQ0D2K5 195 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 C5orf64Q2M2E5 130 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 CXorf66Q5JRM2 361 aaPredicted RBP9.43□□□□□ -0.9
USP40-210ENST00000454354 FAM131AQ6UXB0 335 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 MRAPQ8TCY5 172 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 RAX2Q96IS3 184 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 KCTD7Q96MP8 289 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 YTHDF1Q9BYJ9 559 aaKnown RBP9.43□□□□□ -0.9
USP40-210ENST00000454354 C11orf54Q9H0W9 315 aaPredicted RBP9.43□□□□□ -0.9
USP40-210ENST00000454354 KCNK7Q9Y2U2 307 aa9.43□□□□□ -0.9
USP40-210ENST00000454354 IGHV7-81A0A0B4J1V7 117 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 TRDCB7Z8K6 153 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 H0YJW9 148 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 MFNGO00587 321 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 HSPA12AO43301 675 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 RBBP9O75884 186 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 DIRAS3O95661 229 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 SCTP09683 121 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 PPIFP30405 207 aaKnown RBP9.42□□□□□ -0.9
USP40-210ENST00000454354 FGF9P31371 208 aaPredicted RBP9.42□□□□□ -0.9
USP40-210ENST00000454354 MC5RP33032 325 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 CEACAM6P40199 344 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 CRIP2P52943 208 aaPredicted RBP9.42□□□□□ -0.9
USP40-210ENST00000454354 MOGAT2Q3SYC2 334 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 LCNL1Q6ZST4 164 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 NR2C2APQ86WQ0 139 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 SPARTQ8N0X7 666 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 OR5AN1Q8NGI8 311 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 OR4A4PQ8NGN8 299 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 OR10R2Q8NGX6 335 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 OR8U1Q8NH10 309 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 FCGR1BQ92637 280 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 RAB3CQ96E17 227 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 ABHD14BQ96IU4 210 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 CABLES2Q9BTV7 478 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 MCRIP2Q9BUT9 160 aaKnown RBP9.42□□□□□ -0.9
USP40-210ENST00000454354 OR51J1Q9H342 316 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 Q9H521 79 aa9.42□□□□□ -0.9
USP40-210ENST00000454354 RAB27BO00194 218 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms