RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 OR4F17Q8NGA8 305 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 CHPT1Q8WUD6 406 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 OR4F4Q96R69 305 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 RASL11BQ9BPW5 248 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 NABP2Q9BQ15 211 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 OR1A1Q9P1Q5 309 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 NOTCH1P46531 2555 aa12.04□□□□□ -0.48
LIMS3-201ENST00000437679 TCRBV4S1A1TA0A5B7 111 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 FABP7O15540 132 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 SCGNO76038 276 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 IGHG2P01859 326 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 FCGR3AP08637 254 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 SERPINB10P48595 397 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 KIR2DS1Q14954 304 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 OR4A4PQ8NGN8 299 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 R3HDM4Q96D70 268 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 CENPOQ9BU64 300 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 PARP12Q9H0J9 701 aaKnown RBP12.03□□□□□ -0.48
LIMS3-201ENST00000437679 C11orf54Q9H0W9 315 aaPredicted RBP12.03□□□□□ -0.48
LIMS3-201ENST00000437679 ABCG5Q9H222 651 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 RNF167Q9H6Y7 350 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 PLSCR3Q9NRY6 295 aa12.03□□□□□ -0.48
LIMS3-201ENST00000437679 A0A1W2PRX2 142 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 ADARB2-AS1A8MUL3 147 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 KCNAB3O43448 404 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 SNRPBP14678 240 aaKnown RBP12.02□□□□□ -0.49
LIMS3-201ENST00000437679 F2RL1P55085 397 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 MMDQ15546 238 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 KHDC1LQ5JSQ8 128 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 LGALS14Q8TCE9 139 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 PHF21AQ96BD5 680 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 ABHD14BQ96IU4 210 aa12.02□□□□□ -0.49
LIMS3-201ENST00000437679 NOL4LQ96MY1 436 aaPredicted RBP12.02□□□□□ -0.49
LIMS3-201ENST00000437679 TSSC4Q9Y5U2 329 aaPredicted RBP12.02□□□□□ -0.49
LIMS3-201ENST00000437679 IGKV1-6A0A0C4DH72 117 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 AP4M1O00189 453 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 CLEC2LP0C7M8 214 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 GPR12P47775 334 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 SCAND1P57086 179 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 ACTBP60709 375 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 SLC35B1P78383 322 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 CDNFQ49AH0 187 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 RPL39P5Q59GN2 51 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 TCTEX1D4Q5JR98 221 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 IDNKQ5T6J7 187 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 C10orf99Q6UWK7 81 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 ZNF329Q86UD4 541 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 RBMXL1Q96E39 390 aaKnown RBP12.01□□□□□ -0.49
LIMS3-201ENST00000437679 ZNF251Q9BRH9 671 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 AGMATQ9BSE5 352 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 GON7Q9BXV9 100 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIMS3-201ENST00000437679 RDH8Q9NYR8 311 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 ZNF230Q9UIE0 474 aaPredicted RBP12.01□□□□□ -0.49
LIMS3-201ENST00000437679 LINC00527Q9UJ94 153 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 ZNF221Q9UK13 617 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 RNF150Q9ULK6 438 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 NOTCH3Q9UM47 2321 aa12.01□□□□□ -0.49
LIMS3-201ENST00000437679 OR5H14A6NHG9 310 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 BET1O15155 118 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 RRP9O43818 475 aaKnown RBP12□□□□□ -0.49
LIMS3-201ENST00000437679 AIREO43918 545 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 DIRAS3O95661 229 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 GSTT2P0CG29 244 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 GSTT2BP0CG30 244 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 PF4V1P10720 104 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 SOX6P35712 828 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 SRSF7Q16629 238 aaKnown RBP eCLIP12□□□□□ -0.49
LIMS3-201ENST00000437679 FAM131AQ6UXB0 335 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 STPG2Q8N412 459 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 FAM71E2Q8N5Q1 922 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 OR10J5Q8NHC4 309 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 MAFIPQ8WZ33 124 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 CABLES2Q9BTV7 478 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 RHBDL2Q9NX52 303 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 ETV7Q9Y603 341 aa12□□□□□ -0.49
LIMS3-201ENST00000437679 PLXNB1O43157 2135 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 LINC01548A6NM66 108 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 TMEM127O75204 238 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 GSTP1P09211 210 aaKnown RBP11.99□□□□□ -0.49
LIMS3-201ENST00000437679 CT45A6P0DMU7 189 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 CT45A5P0DMU8 189 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 CT45A7P0DMV0 189 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 DTYMKP23919 212 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 MC5RP33032 325 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 PITPNAQ00169 270 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 DEFA6Q01524 100 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 IGSF11Q5DX21 431 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 HACD4Q5VWC8 232 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 Q6ZS49 121 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 COMMD1Q8N668 190 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 YIPF6Q96EC8 236 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 GINS4Q9BRT9 223 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 TOLLIPQ9H0E2 274 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 KIAA1456Q9P272 454 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 ZNF107Q9UII5 783 aaPredicted RBP11.99□□□□□ -0.49
LIMS3-201ENST00000437679 WASHC3Q9Y3C0 194 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 MEGF8Q7Z7M0 2845 aa11.99□□□□□ -0.49
LIMS3-201ENST00000437679 TRBV6-7A0A0A0MS04 114 aa11.98□□□□□ -0.49
LIMS3-201ENST00000437679 H0YJW9 148 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms