RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 C16orf82Q7Z2V1 217 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.44□□□□□ -1.06
COL17A1-203ENST00000393211 ZNF645Q8N7E2 425 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 CT55Q8WUE5 264 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 ZNF488Q96MN9 340 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 NOL4LQ96MY1 436 aaPredicted RBP8.44□□□□□ -1.06
COL17A1-203ENST00000393211 GP6Q9HCN6 339 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.44□□□□□ -1.06
COL17A1-203ENST00000393211 KCNIP1Q9NZI2 227 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 KCNS2Q9ULS6 477 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 LAMP3Q9UQV4 416 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 XIRP2A4UGR9 3374 aa8.44□□□□□ -1.06
COL17A1-203ENST00000393211 UBE2L5PA0A1B0GUS4 154 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 C17orf112F2Z3M2 114 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 GGCTO75223 188 aaKnown RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 NEURL1O76050 574 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 CD99P14209 185 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 GALR1P47211 349 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 LCN2P80188 198 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 GABRA6Q16445 453 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 C9orf135Q5VTT2 229 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 CDPF1Q6NVV7 123 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 NUFIP2Q7Z417 695 aaKnown RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 MCEMP1Q8IX19 187 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 C17orf78Q8N4C9 275 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 CISD2Q8N5K1 135 aaKnown RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 WDR31Q8NA23 367 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 OR1K1Q8NGR3 316 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 TMEM170AQ8WVE7 144 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 SNX22Q96L94 193 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 SSX3Q99909 188 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 A0A087X0M5 115 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 A0A1B0GX30 115 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 A0A1W2PR80 420 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 TMEM210A6NLX4 147 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 LRRC30A6NM36 301 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 RAB29O14966 203 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 ATXN7O15265 892 aaPredicted RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 WDR1O75083 606 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 RHBDL1O75783 438 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 CLDN1O95832 211 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 ZNF16P17020 682 aaPredicted RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 MDKP21741 143 aaPredicted RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 CA6P23280 308 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 ACP1P24666 158 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 ELLP55199 621 aaPredicted RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 FOXG1P55316 489 aaPredicted RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 COL10A1Q03692 680 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 SRYQ05066 204 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 MRPL49Q13405 166 aaKnown RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 EIF4EBP1Q13541 118 aaPredicted RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 IGFBP7Q16270 282 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 PDZD11Q5EBL8 140 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 ABHD17BQ5VST6 288 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 SPINK14Q6IE38 97 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 KCNIP4Q6PIL6 250 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 SSX9Q7RTT3 188 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 UBALD2Q8IYN6 164 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 SCCPDHQ8NBX0 429 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 OR10P1Q8NGE3 313 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 OR10G9Q8NGN4 311 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 OR10G7Q8NGN6 311 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 BCL2L2Q92843 193 aaPredicted RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 HLA-CQ95604 372 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 RAB24Q969Q5 203 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 NEIL1Q96FI4 390 aaPredicted RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 THOC3Q96J01 351 aaKnown RBP8.43□□□□□ -1.06
COL17A1-203ENST00000393211 DIRC2Q96SL1 478 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 IMMP2LQ96T52 175 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 TXNDC17Q9BRA2 123 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 PARLQ9H300 379 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 CHODLQ9H9P2 273 aa8.43□□□□□ -1.06
COL17A1-203ENST00000393211 TRIOBPQ9H2D6 2365 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 TMEM30CPA0ZSE6 113 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 PMS2P5A8MQ11 134 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 ZNF891A8MT65 544 aaPredicted RBP8.42□□□□□ -1.06
COL17A1-203ENST00000393211 SIRPB1O00241 398 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 LILRA1O75019 489 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 CLDN14O95500 239 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 IGKV1D-33P01593 117 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 IGKV1-33P01594 117 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 AMBPP02760 352 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 RD3LP0DJH9 198 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 RAC2P15153 192 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 SELEP16581 610 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 CCKARP32238 428 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 GNB2P62879 340 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 TBC1D28Q2M2D7 210 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 C4orf17Q53FE4 359 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 ACTL10Q5JWF8 245 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 SLC35E4Q6ICL7 350 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 ACSM6Q6P461 480 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 ZNF709Q8N972 641 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 BEND2Q8NDZ0 799 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 OR2T10Q8NGZ9 312 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 FAM216AQ8WUB2 273 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 GALMQ96C23 342 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 DDA1Q9BW61 102 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 TTTY12Q9BZ98 90 aa8.42□□□□□ -1.06
COL17A1-203ENST00000393211 SDK2Q58EX2 2172 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms