RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TIMM9Q9Y5J7 89 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 ATP23Q9Y6H3 246 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 EML6Q6ZMW3 1958 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 TRBV20OR9-2A0A075B6H5 130 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 OR6C6A6NF89 314 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 C11orf94C9JXX5 98 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 ZNF32P17041 273 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 CBLN1P23435 193 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 NTF4P34130 210 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 CTRLP40313 264 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 OR1D5P58170 312 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 TPPP2P59282 170 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 RPP30P78346 268 aaKnown RBP5.75□□□□□ -1.49
VPS39-202ENST00000348544 TFF3Q07654 80 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 ZNF585BQ52M93 769 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 PRAMEF20Q5VT98 475 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 TMEM14EPQ6UXP3 125 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 C17orf82Q86X59 251 aaPredicted RBP5.75□□□□□ -1.49
VPS39-202ENST00000348544 FADS6Q8N9I5 356 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 FGFBP3Q8TAT2 258 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 LSM10Q969L4 123 aaKnown RBP5.75□□□□□ -1.49
VPS39-202ENST00000348544 SLC35E1Q96K37 410 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 PATZ1Q9HBE1 687 aaKnown RBP5.75□□□□□ -1.49
VPS39-202ENST00000348544 FBXL7Q9UJT9 491 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 OR2W1Q9Y3N9 320 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 KIR2DS1A0A191URI9 304 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 NPIPA2E9PIF3 369 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 NPIPA3F8WFD2 350 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 TMPRSS2O15393 492 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 LINC01565O15544 149 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 ZNHIT1O43257 154 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 FRMD6-AS1P0C7T7 363 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 CD99P14209 185 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 KIR2DS4P43632 304 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 ATP5G3P48201 142 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 ARL4DP49703 201 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 RANP62826 216 aaKnown RBP5.75□□□□□ -1.49
VPS39-202ENST00000348544 PAFAH1B2P68402 229 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 KIR2DS1Q14954 304 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 FFAR4Q5NUL3 377 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 Q6ZVH6 145 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 STRADBQ9C0K7 418 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 ZDHHC11Q9H8X9 412 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 OR1A1Q9P1Q5 309 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 ERRFI1Q9UJM3 462 aaPredicted RBP5.75□□□□□ -1.49
VPS39-202ENST00000348544 WDFY3Q8IZQ1 3526 aa5.75□□□□□ -1.49
VPS39-202ENST00000348544 ZNF816-ZNF321PA0A0X1KG74 233 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 NDUFB4O95168 129 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 CA3P07451 260 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 B4GALT1P15291 398 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 CCR5P51681 352 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 PSG4Q00888 419 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 MSMO1Q15800 293 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 SAPCD1Q5SSQ6 148 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 OR1L1Q8NH94 360 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 BADQ92934 168 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 SFRP2Q96HF1 295 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 CIB3Q96Q77 187 aaPredicted RBP5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A10PA6NDY2 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A18PA6NE21 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A16PA6NEW6 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A20PA6NIJ5 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A8PA6NJQ4 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A7PA6NKC0 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A22PA8MWA6 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A12PA8MX19 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A5PA8MXJ8 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A23PA8MXZ1 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 TNFSF11O14788 317 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 DKK1O94907 266 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 CTXN2P0C2S0 81 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A15PP0C7V4 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A13PP0C7W8 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A14PP0C7W9 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FAM90A24PP0C7X0 464 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 CLDN15P56746 228 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 BPIFB3P59826 476 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 UBE2G2P60604 165 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 FGF12P61328 243 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 RPS16P62249 146 aaKnown RBP5.74□□□□□ -1.49
VPS39-202ENST00000348544 COTL1Q14019 142 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 TRIP6Q15654 476 aaKnown RBP5.74□□□□□ -1.49
VPS39-202ENST00000348544 TMPRSS7Q7RTY8 843 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 OR5AU1Q8NGC0 362 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 C22orf15Q8WYQ4 148 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 CLDN23Q96B33 292 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 OR6C1Q96RD1 312 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 MTCH1Q9NZJ7 389 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 PPP1R3CQ9UQK1 317 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 UNC13CQ8NB66 2214 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 CFAP54Q96N23 3096 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 ABCA7Q8IZY2 2146 aa5.74□□□□□ -1.49
VPS39-202ENST00000348544 A0A1W2PPC4 97 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 NKX6-3A6NJ46 265 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 PMS2P5A8MQ11 134 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 SH2D1BO14796 132 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 CLDN1O95832 211 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 OR5G3P0C626 314 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 CRISP2P16562 243 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 SPINK2P20155 84 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms