RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 FAM96BQ9Y3D0 163 aa17.96■□□□□ 0.46
SDC3-202ENST00000339394 J3QRK9 145 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 RAB3DO95716 219 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 AADACP22760 399 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 TSPAN5P62079 268 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 ZNF846Q147U1 533 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 SSX2Q16385 188 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 LDLRAD3Q86YD5 345 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 DYNAPQ8N1N2 210 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 TOMM5Q8N4H5 51 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 ABHD14BQ96IU4 210 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 HILPDAQ9Y5L2 63 aa17.95■□□□□ 0.46
SDC3-202ENST00000339394 PPYP01298 95 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 CD40LGP29965 261 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 CEACAM3P40198 252 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 KLF9Q13886 244 aaPredicted RBP17.94■□□□□ 0.46
SDC3-202ENST00000339394 DIAPH2-AS1Q14236 149 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 DEFB112Q30KQ8 113 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 TRIQKQ629K1 86 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 FAAP20Q6NZ36 180 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 OR6F1Q8NGZ6 308 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 ST6GALNAC6Q969X2 333 aa17.94■□□□□ 0.46
SDC3-202ENST00000339394 ZNF2Q9BSG1 426 aaPredicted RBP17.94■□□□□ 0.46
SDC3-202ENST00000339394 RBM7Q9Y580 266 aaKnown RBP17.94■□□□□ 0.46
SDC3-202ENST00000339394 IFNA6P05013 189 aa17.93■□□□□ 0.46
SDC3-202ENST00000339394 AKAIN1P0CW23 69 aa17.93■□□□□ 0.46
SDC3-202ENST00000339394 IL7P13232 177 aa17.93■□□□□ 0.46
SDC3-202ENST00000339394 ZNF137PP52743 207 aa17.93■□□□□ 0.46
SDC3-202ENST00000339394 AP3S2P59780 193 aa17.93■□□□□ 0.46
SDC3-202ENST00000339394 CCDC32Q9BV29 185 aa17.93■□□□□ 0.46
SDC3-202ENST00000339394 GHITMQ9H3K2 345 aa17.93■□□□□ 0.46
SDC3-202ENST00000339394 PIPOXQ9P0Z9 390 aa17.93■□□□□ 0.46
SDC3-202ENST00000339394 NIPBLQ6KC79 2804 aaeCLIP17.92■□□□□ 0.46
SDC3-202ENST00000339394 SAA2-SAA4A0A096LPE2 208 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 IGKV1D-13A0A0B4J2D9 117 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 MDFIC2A0A1B0GVS7 189 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 RAB29O14966 203 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 FBP1P09467 338 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 SAA2P0DJI9 122 aaPredicted RBP17.92■□□□□ 0.46
SDC3-202ENST00000339394 IGKV1-13P0DP09 117 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 IL3RAP26951 378 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 LUMP51884 338 aaPredicted RBP17.92■□□□□ 0.46
SDC3-202ENST00000339394 SCGB2A2Q13296 93 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 MEF2DQ14814 521 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 TPTE2P1Q5T6R2 138 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 ARRDC1Q8N5I2 433 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 OR4C16Q8NGL9 310 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 FAM216AQ8WUB2 273 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 RPEQ96AT9 228 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 ZNF48Q96MX3 618 aaPredicted RBP17.92■□□□□ 0.46
SDC3-202ENST00000339394 SLC6A7Q99884 636 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 OR2D2Q9H210 308 aa17.92■□□□□ 0.46
SDC3-202ENST00000339394 FAM157CP0CG43 387 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 REG1BP48304 166 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 TUSC1Q2TAM9 212 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 ZNF57Q68EA5 555 aaPredicted RBP17.91■□□□□ 0.46
SDC3-202ENST00000339394 OR56B4Q8NH76 319 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 MEGF9Q9H1U4 602 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 HSD17B6O14756 317 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 AMY2AP04746 511 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 ZNF735P0CB33 412 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 GPR12P47775 334 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 INPP1P49441 399 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 FXYD4P59646 89 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 TOMM40LQ969M1 308 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 ZNF251Q9BRH9 671 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 ZNF221Q9UK13 617 aa17.91■□□□□ 0.46
SDC3-202ENST00000339394 PROP1O75360 226 aa17.9■□□□□ 0.46
SDC3-202ENST00000339394 RPL39P5Q59GN2 51 aa17.9■□□□□ 0.46
SDC3-202ENST00000339394 ZNF833PQ6ZTB9 187 aa17.9■□□□□ 0.46
SDC3-202ENST00000339394 TMEM17Q86X19 198 aa17.9■□□□□ 0.46
SDC3-202ENST00000339394 RTN4IP1Q8WWV3 396 aaPredicted RBP17.9■□□□□ 0.46
SDC3-202ENST00000339394 MOB3AQ96BX8 217 aa17.9■□□□□ 0.46
SDC3-202ENST00000339394 HRASLSQ9HDD0 168 aa17.9■□□□□ 0.46
SDC3-202ENST00000339394 OOSP1A8MZH6 123 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 GAPDHP04406 335 aaKnown RBP17.89■□□□□ 0.45
SDC3-202ENST00000339394 HERV-K104P61576 105 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 PLA1AQ53H76 456 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 AADACL3Q5VUY0 350 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 SECTM1Q8WVN6 248 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 DEDD2Q8WXF8 326 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 S1PR3Q99500 378 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 PRDM13Q9H4Q3 707 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 OCEL1Q9H607 264 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 MCUBQ9NWR8 336 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 SDHAF2Q9NX18 166 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 GAB2Q9UQC2 676 aa17.89■□□□□ 0.45
SDC3-202ENST00000339394 OR5H14A6NHG9 310 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 DISC1C4P0D8 188 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 IGLV2-14P01704 120 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 ZNF816Q0VGE8 651 aaPredicted RBP17.88■□□□□ 0.45
SDC3-202ENST00000339394 SCGB2B2Q4G0G5 96 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 CCDC144NLQ6NUI1 221 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 LHFPL1Q86WI0 220 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 TGIF2LXQ8IUE1 241 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 ZNF645Q8N7E2 425 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 SIGLECL1Q8N7X8 197 aa17.88■□□□□ 0.45
SDC3-202ENST00000339394 LINC00854A0A1B0GVQ3 168 aa17.87■□□□□ 0.45
SDC3-202ENST00000339394 FAUP35544 74 aaKnown RBP17.87■□□□□ 0.45
SDC3-202ENST00000339394 FAM71F2Q6NXP2 309 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms