RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PROP1O75360 226 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 CXCL2P19875 107 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 F2RP25116 425 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 GNG10P50151 68 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 DLX1P56177 255 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 RPL30P62888 115 aaKnown RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 PRB3Q04118 309 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 Q3ZCU0 254 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 LGALSLQ3ZCW2 172 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 LRRC10Q5BKY1 277 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 CT45A1Q5HYN5 189 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 OR2B11Q5JQS5 317 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 ZNF841Q6ZN19 808 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 C1orf229Q6ZS94 237 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 FAM185AQ8N0U4 392 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 LGI3Q8N145 548 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 CT45A3Q8NHU0 189 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 NEU4Q8WWR8 484 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 NRGNQ92686 78 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 CORO2AQ92828 525 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 KRTAP9-9Q9BYP9 154 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 KRTAP9-4Q9BYQ2 154 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 IFI27L2Q9H2X8 130 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 PLEKHF2Q9H8W4 249 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 SDHAF2Q9NX18 166 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 GFOD1Q9NXC2 390 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 GSKIPQ9P0R6 139 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 JPT1Q9UK76 154 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 KLF2Q9Y5W3 355 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 LINC00312Q9Y6C7 94 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 UTP20O75691 2785 aaKnown RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 UBR5O95071 2799 aaPredicted RBP3.41□□□□□ -1.86
MCF2-201ENST00000338585 ARHGAP32A7KAX9 2087 aa3.41□□□□□ -1.86
MCF2-201ENST00000338585 A0A0G2JRQ6 117 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 ZNF729A6NN14 1252 aaPredicted RBP3.4□□□□□ -1.86
MCF2-201ENST00000338585 H0Y980 276 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 H0YIZ8 118 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 ARPC5O15511 151 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 YPEL1O60688 119 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 F12P00748 615 aaPredicted RBP3.4□□□□□ -1.86
MCF2-201ENST00000338585 AVPP01185 164 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 IGKV1-39P01597 117 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 IGKV1D-39P04432 117 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 RPA2P15927 270 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 UCP1P25874 307 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 COL8A1P27658 744 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 BRWD1-AS2P59051 145 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 IL15RAQ13261 267 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 EIF4EBP1Q13541 118 aaPredicted RBP3.4□□□□□ -1.86
MCF2-201ENST00000338585 IZUMO4Q1ZYL8 232 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 IAH1Q2TAA2 248 aaPredicted RBP3.4□□□□□ -1.86
MCF2-201ENST00000338585 ZNF585BQ52M93 769 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 RPL39P5Q59GN2 51 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 FOXRED2Q8IWF2 684 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 SELENOHQ8IZQ5 122 aaKnown RBP3.4□□□□□ -1.86
MCF2-201ENST00000338585 ZNF525Q8N782 197 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 ZNF645Q8N7E2 425 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 LRTM2Q8N967 370 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 AKR1E2Q96JD6 320 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 C2orf50Q96LR7 162 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 ZNF714Q96N38 554 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 YPEL2Q96QA6 119 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 CHODLQ9H9P2 273 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 IDI2-AS1Q9NZ38 188 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 SPG11Q96JI7 2443 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 DOCK11Q5JSL3 2073 aa3.4□□□□□ -1.86
MCF2-201ENST00000338585 MED13LQ71F56 2210 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 LINC00473A8K010 186 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 C17orf98A8MV24 154 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 OVOL3O00110 214 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 NDUFA2O43678 99 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 RAMP3O60896 148 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 TSC22D2O75157 780 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 MPC2O95563 127 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 CDS2O95674 445 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 WNT2P09544 360 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 GPR12P47775 334 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 EFNA4P52798 201 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 AP2S1P53680 142 aaPredicted RBP3.4□□□□□ -1.87
MCF2-201ENST00000338585 DLX6P56179 175 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 MRPS11P82912 194 aaKnown RBP3.4□□□□□ -1.87
MCF2-201ENST00000338585 TLE4Q04727 773 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 MEF2CQ06413 473 aaPredicted RBP3.4□□□□□ -1.87
MCF2-201ENST00000338585 RAB32Q13637 225 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 C11orf87Q6NUJ2 197 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 ZNF695Q8IW36 515 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 C11orf42Q8N5U0 333 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 ZNF439Q8NDP4 499 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 OR52M1Q8NGK5 317 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 TCTEX1D2Q8WW35 142 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 IGFBPL1Q8WX77 278 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 RAB1CQ92928 201 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 TMEM56Q96MV1 263 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 ABHD14AQ9BUJ0 271 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 RNF126Q9BV68 326 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 NMES1Q9C002 83 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 LINC00574Q9H8X3 128 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 TAS2R3Q9NYW6 316 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 OR5AC2Q9NZP5 309 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 COMMD9Q9P000 198 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms