RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 FAM71F2Q6NXP2 309 aa11.18□□□□□ -0.62
LIMS1-201ENST00000332345 ODF3L1Q8IXM7 274 aa11.18□□□□□ -0.62
LIMS1-201ENST00000332345 SLC25A38Q96DW6 304 aa11.18□□□□□ -0.62
LIMS1-201ENST00000332345 EAF1Q96JC9 268 aaPredicted RBP11.18□□□□□ -0.62
LIMS1-201ENST00000332345 ST6GALNAC5Q9BVH7 336 aa11.18□□□□□ -0.62
LIMS1-201ENST00000332345 C11orf54Q9H0W9 315 aaPredicted RBP11.18□□□□□ -0.62
LIMS1-201ENST00000332345 ABCG5Q9H222 651 aa11.18□□□□□ -0.62
LIMS1-201ENST00000332345 OR1A1Q9P1Q5 309 aa11.18□□□□□ -0.62
LIMS1-201ENST00000332345 ELF5Q9UKW6 265 aaPredicted RBP11.18□□□□□ -0.62
LIMS1-201ENST00000332345 IGKV1-6A0A0C4DH72 117 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 TMEM235A6NFC5 223 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 NCBP2LA6PVI3 153 aaKnown RBP11.17□□□□□ -0.62
LIMS1-201ENST00000332345 FGF16O43320 207 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 VSIG10L2P0DP72 767 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 VDAC2P45880 294 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-201ENST00000332345 OR3A3P47888 321 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 ALDH3B2P48448 385 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 RORCP51449 518 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 KRTAP10-3P60369 221 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 FBLN7Q53RD9 439 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 IGSF11Q5DX21 431 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 UBE2NLQ5JXB2 153 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 Q6ZS46 218 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 ZNF833PQ6ZTB9 187 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 KLHDC1Q8N7A1 406 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 OR8H1Q8NGG4 311 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 MAFIPQ8WZ33 124 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 GINS4Q9BRT9 223 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 AGMATQ9BSE5 352 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 TOLLIPQ9H0E2 274 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 IFI27L2Q9H2X8 130 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 SERTAD4Q9NUC0 356 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 RDH8Q9NYR8 311 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 ZNF221Q9UK13 617 aa11.17□□□□□ -0.62
LIMS1-201ENST00000332345 SAA2-SAA4A0A096LPE2 208 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 TRBV6-7A0A0A0MS04 114 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 XRCC3O43542 346 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 GABARAPO95166 117 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 AMY1AP04745 511 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 AMY2AP04746 511 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 CTXN2P0C2S0 81 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 SAA2P0DJI9 122 aaPredicted RBP11.16□□□□□ -0.62
LIMS1-201ENST00000332345 LSAMPQ13449 338 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 HERPUD1Q15011 391 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 CTF1Q16619 201 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 C9orf152Q5JTZ5 239 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 SAMD12Q8N8I0 201 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 ACOT12Q8WYK0 555 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 ABHD14BQ96IU4 210 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 NABP2Q9BQ15 211 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 CABLES2Q9BTV7 478 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 RNF150Q9ULK6 438 aa11.16□□□□□ -0.62
LIMS1-201ENST00000332345 ZNF736B4DX44 427 aaPredicted RBP11.15□□□□□ -0.62
LIMS1-201ENST00000332345 MC5RP33032 325 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 GPR12P47775 334 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 CENPVQ7Z7K6 275 aaPredicted RBP11.15□□□□□ -0.62
LIMS1-201ENST00000332345 Q8N6K4 173 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 C5orf56Q8N8D9 126 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 NUDCD2Q8WVJ2 157 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 CMTM3Q96MX0 182 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 RASL11BQ9BPW5 248 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 MRPL20Q9BYC9 149 aaKnown RBP11.15□□□□□ -0.62
LIMS1-201ENST00000332345 NAA50Q9GZZ1 169 aaKnown RBP11.15□□□□□ -0.62
LIMS1-201ENST00000332345 PARP12Q9H0J9 701 aaKnown RBP11.15□□□□□ -0.62
LIMS1-201ENST00000332345 AUNIPQ9H7T9 357 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 COMMD3Q9UBI1 195 aa11.15□□□□□ -0.62
LIMS1-201ENST00000332345 RBM7Q9Y580 266 aaKnown RBP11.15□□□□□ -0.62
LIMS1-201ENST00000332345 SMIM31A0A1B0GVY4 71 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 M0QZ24 198 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 OR8U9P0C7N5 309 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 CBX5P45973 191 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 RPL5P46777 297 aaKnown RBP11.14□□□□□ -0.63
LIMS1-201ENST00000332345 RPL39P5Q59GN2 51 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 MZT2AQ6P582 158 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 CNIH2Q6PI25 160 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.14□□□□□ -0.63
LIMS1-201ENST00000332345 OR8U1Q8NH10 309 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 AP3S1Q92572 193 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 ZNF251Q9BRH9 671 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 WNT10AQ9GZT5 417 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 GAB2Q9UQC2 676 aa11.14□□□□□ -0.63
LIMS1-201ENST00000332345 TRRAPQ9Y4A5 3859 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 IGKV1D-8A0A087WSZ0 117 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 OR5H14A6NHG9 310 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 SH2D7A6NKC9 451 aaPredicted RBP11.13□□□□□ -0.63
LIMS1-201ENST00000332345 SSX5O60225 188 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 CT45A6P0DMU7 189 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 CT45A5P0DMU8 189 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 CT45A7P0DMV0 189 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 PRR31Q5SQ13 230 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 TMEM69Q5SWH9 247 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 PLSCR3Q9NRY6 295 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 LIN7CQ9NUP9 197 aaKnown RBP11.13□□□□□ -0.63
LIMS1-201ENST00000332345 ANXA10Q9UJ72 324 aa11.13□□□□□ -0.63
LIMS1-201ENST00000332345 TET2Q6N021 2002 aaPredicted RBP11.13□□□□□ -0.63
LIMS1-201ENST00000332345 APOA1P02647 267 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 ZNF182P17025 639 aaPredicted RBP11.12□□□□□ -0.63
LIMS1-201ENST00000332345 TMBIM6P55061 237 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 F2RL1P55085 397 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 ARPC4P59998 168 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms