RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 HOXA5P20719 270 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 IGHV1-2P23083 117 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 MRPL49Q13405 166 aaKnown RBP13.55□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF146Q15072 292 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF726P1Q15940 193 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 HAPLN4Q86UW8 402 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 CDH20Q9HBT6 801 aa13.55□□□□□ -0.24
USHBP1-202ENST00000324554 MBNL3Q9NUK0 354 aaKnown RBP13.55□□□□□ -0.24
USHBP1-202ENST00000324554 SYNGR2O43760 224 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 GLIPR1P48060 266 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 RTP5Q14D33 572 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF674Q2M3X9 581 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 FAM90A2PQ658T7 463 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 SLC35E3Q7Z769 313 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 SLC25A40Q8TBP6 338 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF665Q9H7R5 613 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 ZFP92A6NM28 416 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 LYZL6O75951 148 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 NXPH2O95156 264 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 RAB2AP61019 212 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 UBE2NP61088 152 aaKnown RBP13.54□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF585BQ52M93 769 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 IGF2-ASQ6U949 168 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 GCNT2Q8N0V5 402 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF525Q8N782 197 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 DOK5Q9P104 306 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 KCNS2Q9ULS6 477 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 WIPI2Q9Y4P8 454 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 RBM7Q9Y580 266 aaKnown RBP13.54□□□□□ -0.24
USHBP1-202ENST00000324554 APC2O95996 2303 aa13.54□□□□□ -0.24
USHBP1-202ENST00000324554 CHD3Q12873 2000 aaKnown RBP13.54□□□□□ -0.24
USHBP1-202ENST00000324554 TRAV20A0A0B4J274 112 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 SELEP16581 610 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 FGF8P55075 233 aaPredicted RBP13.53□□□□□ -0.24
USHBP1-202ENST00000324554 NDUFA6P56556 154 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 RAB11AP62491 216 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 LCN15Q6UWW0 184 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 PSENENQ9NZ42 101 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 IQCF6A8MYZ5 107 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 WDR1O75083 606 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 IGHV2-70P01814 119 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 RAC2P15153 192 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF16P17020 682 aaPredicted RBP13.53□□□□□ -0.24
USHBP1-202ENST00000324554 CD200P41217 278 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 TGFBR3Q03167 851 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 PSG7Q13046 419 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 GGACTQ9BVM4 153 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 TOLLIPQ9H0E2 274 aa13.53□□□□□ -0.24
USHBP1-202ENST00000324554 LIN7CQ9NUP9 197 aaKnown RBP13.53□□□□□ -0.24
USHBP1-202ENST00000324554 MAP1BP46821 2468 aaKnown RBP13.53□□□□□ -0.24
USHBP1-202ENST00000324554 DIDO1Q9BTC0 2240 aaKnown RBP13.52□□□□□ -0.24
USHBP1-202ENST00000324554 CXorf65A6NEN9 183 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF891A8MT65 544 aaPredicted RBP13.52□□□□□ -0.24
USHBP1-202ENST00000324554 K7EM74 188 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 SH2D1BO14796 132 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 CYB5BO43169 146 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 CEACAM6P40199 344 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 CDX1P47902 265 aaPredicted RBP13.52□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF787Q6DD87 383 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 ZNF610Q8N9Z0 462 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 OR10G4Q8NGN3 311 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 SIRT7Q9NRC8 400 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 KIAA2026Q5HYC2 2103 aa13.52□□□□□ -0.24
USHBP1-202ENST00000324554 HIST1H2BKO60814 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST1H2BJP06899 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 GRPP07492 148 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 BCL2P10415 239 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST1H2BOP23527 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 S100PP25815 95 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST1H2BBP33778 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 PLA2G5P39877 138 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 CEBPDP49716 269 aaPredicted RBP13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST1H2BDP58876 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST1H2BCP62807 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST2H2BEQ16778 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.52□□□□□ -0.25
USHBP1-202ENST00000324554 SPNS3Q6ZMD2 512 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 DRAM1Q8N682 238 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 SCGB1C1Q8TD33 95 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST1H2BHQ93079 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 RCC1LQ96I51 464 aaKnown RBP13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST1H2BNQ99877 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 HIST1H2BMQ99879 126 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 BCL2L14Q9BZR8 327 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 CLCF1Q9UBD9 225 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 OR14J1Q9UGF5 321 aa13.52□□□□□ -0.25
USHBP1-202ENST00000324554 ANKRD11Q6UB99 2663 aaPredicted RBP13.52□□□□□ -0.25
USHBP1-202ENST00000324554 PIEZO2Q9H5I5 2752 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 GABRA6Q16445 453 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 FAM209BQ5JX69 171 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 CISD1Q9NZ45 108 aaKnown RBP13.51□□□□□ -0.25
USHBP1-202ENST00000324554 ACACAQ13085 2346 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 TRBV23-1A0A0A0MS06 115 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 PSPNO60542 156 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 HAND1O96004 215 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 TRGC2P03986 189 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 MPV17P39210 176 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 PYY3Q5JQD4 70 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 MBD3L1Q8WWY6 194 aa13.51□□□□□ -0.25
USHBP1-202ENST00000324554 LRRC75BQ2VPJ9 315 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms