RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 RASL11BQ9BPW5 248 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 RAB22AQ9UL26 194 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 KCNK7Q9Y2U2 307 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 DNAH3Q8TD57 4116 aa12.85□□□□□ -0.35
LSM1-201ENST00000311351 IGKV1-6A0A0C4DH72 117 aa12.84□□□□□ -0.35
LSM1-201ENST00000311351 AP4M1O00189 453 aa12.84□□□□□ -0.35
LSM1-201ENST00000311351 GALP22466 123 aa12.84□□□□□ -0.35
LSM1-201ENST00000311351 KPRPQ5T749 579 aaPredicted RBP12.84□□□□□ -0.35
LSM1-201ENST00000311351 ZNF773Q6PK81 442 aa12.84□□□□□ -0.35
LSM1-201ENST00000311351 OR8H1Q8NGG4 311 aa12.84□□□□□ -0.35
LSM1-201ENST00000311351 ABHD14BQ96IU4 210 aa12.84□□□□□ -0.35
LSM1-201ENST00000311351 RITA1Q96K30 269 aa12.84□□□□□ -0.35
LSM1-201ENST00000311351 ZNF251Q9BRH9 671 aa12.84□□□□□ -0.35
LSM1-201ENST00000311351 TXNL4BQ9NX01 149 aaKnown RBP12.84□□□□□ -0.35
LSM1-201ENST00000311351 A0A075B6Q4 140 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 HSPA12AO43301 675 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 CD33P20138 364 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 ACTBP60709 375 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 RPL23AP62750 156 aaKnown RBP12.83□□□□□ -0.36
LSM1-201ENST00000311351 SLC35B1P78383 322 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 FAM131AQ6UXB0 335 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 GLDNQ6ZMI3 551 aaPredicted RBP12.83□□□□□ -0.36
LSM1-201ENST00000311351 ETV3LQ6ZN32 361 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 LCNL1Q6ZST4 164 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 RAB3CQ96E17 227 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 STUB1Q9UNE7 303 aa12.83□□□□□ -0.36
LSM1-201ENST00000311351 RAB27BO00194 218 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 MFNGO00587 321 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 RAB29O14966 203 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 FCGR3AP08637 254 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 CD3GP09693 182 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 IGLL1P15814 213 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 GNB3P16520 340 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 SOX6P35712 828 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 CEACAM6P40199 344 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 FAM71F2Q6NXP2 309 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 C8orf86Q6ZUL3 223 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 OR10R2Q8NGX6 335 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 MAFIPQ8WZ33 124 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 PHF21AQ96BD5 680 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 AGMATQ9BSE5 352 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 C11orf54Q9H0W9 315 aaPredicted RBP12.82□□□□□ -0.36
LSM1-201ENST00000311351 OR51E2Q9H255 320 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 PIPOXQ9P0Z9 390 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 ZNF107Q9UII5 783 aaPredicted RBP12.82□□□□□ -0.36
LSM1-201ENST00000311351 MGAT4AQ9UM21 535 aa12.82□□□□□ -0.36
LSM1-201ENST00000311351 HIST1H1DP16402 221 aaKnown RBP12.81□□□□□ -0.36
LSM1-201ENST00000311351 RAB6AP20340 208 aa12.81□□□□□ -0.36
LSM1-201ENST00000311351 ZBTB25P24278 435 aa12.81□□□□□ -0.36
LSM1-201ENST00000311351 FGF9P31371 208 aaPredicted RBP12.81□□□□□ -0.36
LSM1-201ENST00000311351 KLHL30-AS1Q8NEE0 82 aa12.81□□□□□ -0.36
LSM1-201ENST00000311351 VCX3AQ9NNX9 186 aa12.81□□□□□ -0.36
LSM1-201ENST00000311351 NUDT19A8MXV4 375 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 TRDCB7Z8K6 153 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 H0YJW9 148 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 ITGB1BP1O14713 200 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 NBR2O15453 112 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 FABP7O15540 132 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 TNFAIP8O95379 198 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 RPLP1P05386 114 aaKnown RBP12.8□□□□□ -0.36
LSM1-201ENST00000311351 CT45A6P0DMU7 189 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 CT45A5P0DMU8 189 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 CT45A7P0DMV0 189 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 GADD45AP24522 165 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 MRPS15P82914 257 aaKnown RBP12.8□□□□□ -0.36
LSM1-201ENST00000311351 CFHR3Q02985 330 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 NEDD8Q15843 81 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 COMMD1Q8N668 190 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 WFDC9Q8NEX5 89 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 EDARADDQ8WWZ3 215 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 RNF167Q9H6Y7 350 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 RDH8Q9NYR8 311 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 ZNF230Q9UIE0 474 aaPredicted RBP12.8□□□□□ -0.36
LSM1-201ENST00000311351 ELF5Q9UKW6 265 aaPredicted RBP12.8□□□□□ -0.36
LSM1-201ENST00000311351 RNF150Q9ULK6 438 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 SSR3Q9UNL2 185 aa12.8□□□□□ -0.36
LSM1-201ENST00000311351 NOTOA8MTQ0 251 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 LINC00205P59089 165 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 PNLIPRP3Q17RR3 467 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 C5orf64Q2M2E5 130 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 IGSF11Q5DX21 431 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 TEX38Q6PEX7 206 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 LINC00482Q8N8I6 264 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 DRAXINQ8NBI3 349 aaPredicted RBP12.79□□□□□ -0.36
LSM1-201ENST00000311351 OR4A4PQ8NGN8 299 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 PTX4Q96A99 478 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 DUX3Q96PT4 197 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 CHCHD6Q9BRQ6 235 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 CABLES2Q9BTV7 478 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 ATG5Q9H1Y0 275 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 DAPK2Q9UIK4 370 aa12.79□□□□□ -0.36
LSM1-201ENST00000311351 IGHV7-81A0A0B4J1V7 117 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 METTL21EPA6NDL7 271 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 OR5H14A6NHG9 310 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 H7C2Y5 167 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 BET1O15155 118 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 ATP6V0E1O15342 81 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 PROP1O75360 226 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 NDUFA3O95167 84 aa12.78□□□□□ -0.36
LSM1-201ENST00000311351 HLA-DRB1P01911 266 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms