RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PAXXQ9BUH6 204 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 TUBA4BQ9H853 241 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 CBLN4Q9NTU7 201 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 RGPD3A6NKT7 1758 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-201ENST00000304636 RGPD4Q7Z3J3 1758 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 SCN3AQ9NY46 2000 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 NPIPB13A6NJU9 1138 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 NPIPB4C9JG80 1138 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 KHDC1LQ5JSQ8 128 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 TMEM108Q6UXF1 575 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 C12orf54Q6X4T0 127 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 FGFRL1Q8N441 504 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 OR8A1Q8NGG7 326 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 CCL17Q92583 94 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 LSM10Q969L4 123 aaKnown RBP11.1□□□□□ -0.63
COL3A1-201ENST00000304636 PSMG3Q9BT73 122 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-201ENST00000304636 IL36RNQ9UBH0 155 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 EGR4Q05215 589 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 SFTPA2Q8IWL1 248 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 HARBI1Q96MB7 349 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 LRRC37AA6NMS7 1700 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 A8MWL6 223 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 IGHV4-34P06331 123 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 CD82P27701 267 aa11.1□□□□□ -0.63
COL3A1-201ENST00000304636 INO80CQ6PI98 192 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-201ENST00000304636 TAS2R60P59551 318 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 IGLV3-21P80748 117 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 ZNF501Q96CX3 271 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 PARLQ9H300 379 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 RNF7Q9UBF6 113 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 FBXW9Q5XUX1 488 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 BHLHA15Q7RTS1 189 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 MOGAT3Q86VF5 341 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 SAXO1Q8IYX7 474 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 RASL11BQ9BPW5 248 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 ZNFX1Q9P2E3 1918 aaKnown RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 IGHV5-10-1A0A0J9YXX1 117 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 TMEM250H0YL14 139 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 MKRN2OSH3BPM6 223 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 RAB29O14966 203 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 CEACAM3P40198 252 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 WNT5AP41221 380 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 UNC119Q13432 240 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 TGIF1Q15583 401 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 COL25A1Q9BXS0 654 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 GREB1LQ9C091 1923 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 A0A087WWC5 75 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 TRBV9A0A0B4J1U6 114 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 ZNF729A6NN14 1252 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 AMY1AP04745 511 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 ZNF137PP52743 207 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 ZNF784Q8NCA9 323 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 QTRT1Q9BXR0 403 aaKnown RBP11.09□□□□□ -0.63
COL3A1-201ENST00000304636 SHANK3Q9BYB0 1731 aa11.09□□□□□ -0.63
COL3A1-201ENST00000304636 A0A1B0GTI1 187 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 TMPRSS2O15393 492 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 SLC35B1P78383 322 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 TMEM45BQ96B21 275 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 ASCL3Q9NQ33 180 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 M0R296 226 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 MT-CO3P00414 261 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 ADRA2AP08913 450 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 COL10A1Q03692 680 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 TNFRSF9Q07011 255 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 SNAI3Q3KNW1 292 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 MDP1Q86V88 176 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 WIPI2Q9Y4P8 454 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 ZNF831Q5JPB2 1677 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 SSX8Q7RTT4 187 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 THSD7AQ9UPZ6 1657 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 PLXNB2O15031 1838 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 COL4A5P29400 1685 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 TMEM229AB2RXF0 380 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 VENTXO95231 258 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 OR2H2O95918 312 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 HOXA5P20719 270 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 GBGT1Q8N5D6 347 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 ANKRD31Q8N7Z5 1873 aa11.08□□□□□ -0.64
COL3A1-201ENST00000304636 CCDC88CQ9P219 2028 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 TMEM265A0A087WTH1 108 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 GAGE10A6NGK3 116 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 CA2P00918 260 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 BMI1P35226 326 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 HERVK_113P61574 105 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 SCGB1D4Q6XE38 83 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 PQLC2Q6ZP29 291 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 ZNF818PQ6ZRF7 136 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 SMIM12Q96EX1 92 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 UFC1Q9Y3C8 167 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 ARID2Q68CP9 1835 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 ASCC3Q8N3C0 2202 aaKnown RBP11.07□□□□□ -0.64
COL3A1-201ENST00000304636 COL11A1P12107 1806 aaPredicted RBP11.07□□□□□ -0.64
COL3A1-201ENST00000304636 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.07□□□□□ -0.64
COL3A1-201ENST00000304636 IL9P15248 144 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 C3AR1Q16581 482 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 TGIF2LYQ8IUE0 185 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 RBM14Q96PK6 669 aaKnown RBP11.07□□□□□ -0.64
COL3A1-201ENST00000304636 PARD6GQ9BYG4 376 aaPredicted RBP11.07□□□□□ -0.64
COL3A1-201ENST00000304636 OR2J1Q9GZK6 312 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 CKAP5Q14008 2032 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms