RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 NEU1Q99519 415 aa12.97□□□□□ -0.33
LSM6-201ENST00000296581 SSX3Q99909 188 aa12.97□□□□□ -0.33
LSM6-201ENST00000296581 PRR13Q9NZ81 148 aa12.97□□□□□ -0.33
LSM6-201ENST00000296581 AKR1C2P52895 323 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 AKR1C1Q04828 323 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 SECTM1Q8WVN6 248 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 GGACTQ9BVM4 153 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 SLC5A7Q9GZV3 580 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 NCOR1P1Q9H4R4 102 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 KCNIP3Q9Y2W7 256 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 RAI1Q7Z5J4 1906 aaPredicted RBP12.96□□□□□ -0.33
LSM6-201ENST00000296581 USP24Q9UPU5 2620 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 PKDREJQ9NTG1 2253 aa12.96□□□□□ -0.33
LSM6-201ENST00000296581 A0A1W2PPE3 182 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 F12P00748 615 aaPredicted RBP12.96□□□□□ -0.34
LSM6-201ENST00000296581 PCP4P48539 62 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 PPT1P50897 306 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 BLOC1S1P78537 153 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 PEA15Q15121 130 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 TRAT1Q6PIZ9 186 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 ZNRF1Q8ND25 227 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 OR13A1Q8NGR1 328 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 TCTEX1D2Q8WW35 142 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 TOLLIPQ9H0E2 274 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 CBY1Q9Y3M2 126 aa12.96□□□□□ -0.34
LSM6-201ENST00000296581 TMEM187Q14656 261 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 CR1LQ2VPA4 569 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 ZNF788Q6ZQV5 615 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 ZNF818PQ6ZRF7 136 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 MUC15Q8N387 334 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 PRR18Q8N4B5 295 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 TPRX1Q8N7U7 411 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 OR1L1Q8NH94 360 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 RNASE11Q8TAA1 199 aaKnown RBP12.95□□□□□ -0.34
LSM6-201ENST00000296581 MRGPRDQ8TDS7 321 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 GALMQ96C23 342 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 GAFA1Q96PS6 74 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 VRK1Q99986 396 aaPredicted RBP12.95□□□□□ -0.34
LSM6-201ENST00000296581 SUCNR1Q9BXA5 334 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 ODAMA1E959 279 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 TMEM178BH3BS89 294 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 MPPED1O15442 326 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 HBZP02008 142 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 OR5AC1P0C628 307 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 NFYBP25208 207 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 C1orf87Q8N0U7 546 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 LRTM2Q8N967 370 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 OR5D13Q8NGL4 314 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 UBALD1Q8TB05 177 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 FAM234AQ9H0X4 552 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 TMPRSS5Q9H3S3 457 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 CCL28Q9NRJ3 127 aa12.95□□□□□ -0.34
LSM6-201ENST00000296581 KALRNO60229 2985 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 TRAV14DV4A0A0A6YYC5 116 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 HSPA12AO43301 675 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 ADAP1O75689 374 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 OR8U8P0C7N1 319 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 RPA2P15927 270 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 RAB4BP61018 213 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 EDDM3AQ14507 147 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 OR10V1Q8NGI7 309 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 SEC22AQ96IW7 307 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 MFFQ9GZY8 342 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 ZNF665Q9H7R5 613 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 TMEM106BQ9NUM4 274 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 RELNP78509 3460 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 IGSF10Q6WRI0 2623 aa12.94□□□□□ -0.34
LSM6-201ENST00000296581 C15orf65H3BRN8 121 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 IGHV2-5P01817 119 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 IL2RGP31785 369 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 RAB2AP61019 212 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 DEFB108BQ8NET1 73 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 OR1S2Q8NGQ3 325 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 NMES1Q9C002 83 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 C5orf51A6NDU8 294 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 GYPAP02724 150 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 CEACAM6P40199 344 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 LUMP51884 338 aaPredicted RBP12.93□□□□□ -0.34
LSM6-201ENST00000296581 CYCSP99999 105 aaKnown RBP12.93□□□□□ -0.34
LSM6-201ENST00000296581 SP6Q3SY56 376 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 CYB5R2Q6BCY4 276 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 LIAT1Q6ZQX7 453 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 REC114Q7Z4M0 266 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 TBC1D26Q86UD7 250 aa12.93□□□□□ -0.34
LSM6-201ENST00000296581 MSI2Q96DH6 328 aaKnown RBP12.93□□□□□ -0.34
LSM6-201ENST00000296581 DSCAML1Q8TD84 2053 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 TRAV38-1A0A0B4J264 116 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 C3orf85A0A1B0GTC6 90 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 C13orf42A0A1B0GVH6 325 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 HSD17B6O14756 317 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 PPIHO43447 177 aaKnown RBP12.92□□□□□ -0.34
LSM6-201ENST00000296581 GZMHP20718 246 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 PAX6P26367 422 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 SSTR5P35346 364 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 DUX4L9Q6RFH8 374 aaPredicted RBP12.92□□□□□ -0.34
LSM6-201ENST00000296581 CMTM1Q8IZ96 169 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 CNTNAP3BQ96NU0 1288 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 CCL13Q99616 98 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 DCTN5Q9BTE1 182 aa12.92□□□□□ -0.34
LSM6-201ENST00000296581 CNTNAP3Q9BZ76 1288 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms