RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ZCCHC14Q8WYQ9 949 aaKnown RBP12.79□□□□□ -0.36
SF3B4-201ENST00000271628 GINS3Q9BRX5 216 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 SMIM3Q9BZL3 60 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 SAV1Q9H4B6 383 aaPredicted RBP12.79□□□□□ -0.36
SF3B4-201ENST00000271628 PPP1R3CQ9UQK1 317 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 KPTNQ9Y664 436 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 FAM157AC9JC47 383 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 K7N7A8 449 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 SPINT2O43291 252 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 TSPAN15O95858 294 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 TFF1P04155 84 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 SERPINE2P07093 398 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 DANCRP0C864 163 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 HOXA1P49639 335 aaPredicted RBP12.79□□□□□ -0.36
SF3B4-201ENST00000271628 RAB13P51153 203 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 HTD2P86397 168 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 PEA15Q15121 130 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 ZNF561Q8N587 486 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 NCOR1P1Q9H4R4 102 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 ZZEF1O43149 2961 aa12.79□□□□□ -0.36
SF3B4-201ENST00000271628 CLEC18AA5D8T8 446 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 RNF212BA8MTL3 300 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 IGLV2-14P01704 120 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 SPP1P10451 314 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 PAX6P26367 422 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 CR1LQ2VPA4 569 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 ADAM5Q6NVV9 412 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 CLEC18CQ8NCF0 446 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 OR4D5Q8NGN0 318 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 OR13A1Q8NGR1 328 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 UBALD1Q8TB05 177 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 RNASE6Q93091 150 aaKnown RBP12.78□□□□□ -0.36
SF3B4-201ENST00000271628 PRORYQ9H606 182 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 PLEKHF2Q9H8W4 249 aa12.78□□□□□ -0.36
SF3B4-201ENST00000271628 IGHV3OR15-7A0A075B7D8 119 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 AGPAT2O15120 278 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 MSMO1Q15800 293 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 KIAA2026Q5HYC2 2103 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 ZNF645Q8N7E2 425 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 TPRX1Q8N7U7 411 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 KDF1Q8NAX2 398 aaPredicted RBP12.77□□□□□ -0.36
SF3B4-201ENST00000271628 OR52M1Q8NGK5 317 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 GPHA2Q96T91 129 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 EGLN1Q9GZT9 426 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 SMCO4Q9NRQ5 59 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 LIN7CQ9NUP9 197 aaKnown RBP12.77□□□□□ -0.36
SF3B4-201ENST00000271628 KCNS2Q9ULS6 477 aa12.77□□□□□ -0.36
SF3B4-201ENST00000271628 ODAMA1E959 279 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 LRRC30A6NM36 301 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 SNCAP37840 140 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 EDDM3AQ14507 147 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 GNMTQ14749 295 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 AVPI1Q5T686 147 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 ZNRF1Q8ND25 227 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 OR52L2PQ8NGH6 319 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 OR51H1Q8NH63 302 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 FAM216AQ8WUB2 273 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 SDSLQ96GA7 329 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 ABHD14BQ96IU4 210 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 RAB9BQ9NP90 201 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 BIN3Q9NQY0 253 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 STRAPQ9Y3F4 350 aaKnown RBP12.77□□□□□ -0.37
SF3B4-201ENST00000271628 PCNX1Q96RV3 2341 aa12.77□□□□□ -0.37
SF3B4-201ENST00000271628 NKX2-6A6NCS4 301 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 NFYBP25208 207 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 TLE1Q04724 770 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 NMSQ5H8A3 153 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 DRAM1Q8N682 238 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 DMBX1Q8NFW5 382 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 PLPPR2Q96GM1 343 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 OR6C3Q9NZP0 311 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 CACFD1Q9UGQ2 172 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 PLCE1Q9P212 2302 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 ADGRG4Q8IZF6 3080 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 MEX3AA1L020 520 aaKnown RBP12.76□□□□□ -0.37
SF3B4-201ENST00000271628 SHISA9B4DS77 424 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 C9JQL5 133 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 CD3EP07766 207 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 SSTR5P35346 364 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 NKX2-1P43699 371 aaPredicted RBP12.76□□□□□ -0.37
SF3B4-201ENST00000271628 CCL8P80075 99 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 TEX36Q5VZQ5 186 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 STUMQ69YW2 141 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 RXFP4Q8TDU9 374 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 EDARADDQ8WWZ3 215 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 FAM234AQ9H0X4 552 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 MS4A5Q9H3V2 200 aa12.76□□□□□ -0.37
SF3B4-201ENST00000271628 POLEQ07864 2286 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 C15orf65H3BRN8 121 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 ATXN7O15265 892 aaPredicted RBP12.75□□□□□ -0.37
SF3B4-201ENST00000271628 ADAM20O43506 726 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 CYB5R3P00387 301 aaPredicted RBP12.75□□□□□ -0.37
SF3B4-201ENST00000271628 CRYBA1P05813 215 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 SLC25A6P12236 298 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 MIDNQ504T8 468 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 C1orf87Q8N0U7 546 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 C15orf54Q8N8G6 183 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 PARP12Q9H0J9 701 aaKnown RBP12.75□□□□□ -0.37
SF3B4-201ENST00000271628 ZNF665Q9H7R5 613 aa12.75□□□□□ -0.37
SF3B4-201ENST00000271628 WFDC1Q9HC57 220 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms