RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RPEQ96AT9 228 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 DIRAS2Q96HU8 199 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 CABLES2Q9BTV7 478 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 ABHD14AQ9BUJ0 271 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 NXF2Q9GZY0 626 aaKnown RBP15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 MMP27Q9H306 513 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 OR1A1Q9P1Q5 309 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 OOSP1A8MZH6 123 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 VENTXO95231 258 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 HLA-DQB1P01920 261 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 CTXN2P0C2S0 81 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 ARPC4P59998 168 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 AANATQ16613 207 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 LRRC75BQ2VPJ9 315 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 IGSF11Q5DX21 431 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 CT45A1Q5HYN5 189 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 LDLRAD2Q5SZI1 272 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 TPTE2P1Q5T6R2 138 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 CCDC144NLQ6NUI1 221 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 HOGA1Q86XE5 327 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 TMEM86BQ8N661 226 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 BEST4Q8NFU0 473 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 CT45A3Q8NHU0 189 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 GINS4Q9BRT9 223 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 SCPEP1Q9HB40 452 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 ABCB10Q9NRK6 738 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 POMT1Q9Y6A1 747 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 A3GALT2U3KPV4 340 aa15.46■□□□□ 0.07
SQSTM1-216ENST00000626660 IGKV1D-8A0A087WSZ0 117 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 IGKV1-6A0A0C4DH72 117 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 LY6LH3BQJ8 138 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 TRIM77I1YAP6 450 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 SLC31A2O15432 143 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 IGHV4-59P01825 116 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 LPLP06858 475 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 S100A5P33763 92 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 IER3P46695 156 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 RAB7AP51149 207 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 HERPUD1Q15011 391 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 PLA1AQ53H76 456 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 FOXB2Q5VYV0 432 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 DYNAPQ8N1N2 210 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 GVQW1Q8N7I0 195 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 ZDHHC22Q8N966 263 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 OR5R1Q8NH85 324 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 GCDHQ92947 438 aaPredicted RBP15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 SSX3Q99909 188 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 ESM1Q9NQ30 184 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 RABL2AQ9UBK7 228 aaPredicted RBP15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 ANXA10Q9UJ72 324 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 RABL2BQ9UNT1 228 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 ATRQ13535 2644 aa15.45■□□□□ 0.06
SQSTM1-216ENST00000626660 TRBV6-7A0A0A0MS04 114 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 MEIS3P1A6NDR6 274 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 CLDN34H7C241 214 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 SULT1C2O00338 296 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 PAX6P26367 422 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 BRS3P32247 399 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 ZNF134P52741 427 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 SLC9A3R2Q15599 337 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 LYG1Q8N1E2 194 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 DUX5Q96PT3 197 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 TNFRSF19Q9NS68 423 aa15.44■□□□□ 0.06
SQSTM1-216ENST00000626660 VGLL3A8MV65 326 aa15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 H3BUX3 64 aa15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 ITGB1BP1O14713 200 aa15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 HSD17B6O14756 317 aa15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 GAPDHP04406 335 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 UBA52P62987 128 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 GPX8Q8TED1 209 aa15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 BATF3Q9NR55 127 aa15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 RDH8Q9NYR8 311 aa15.43■□□□□ 0.06
SQSTM1-216ENST00000626660 ST8SIA5O15466 376 aa15.42■□□□□ 0.06
SQSTM1-216ENST00000626660 FCER2P06734 321 aa15.42■□□□□ 0.06
SQSTM1-216ENST00000626660 TNFSF8P32971 234 aa15.42■□□□□ 0.06
SQSTM1-216ENST00000626660 DYNLT3P51808 116 aa15.42■□□□□ 0.06
SQSTM1-216ENST00000626660 IL18Q14116 193 aa15.42■□□□□ 0.06
SQSTM1-216ENST00000626660 OR8H3Q8N146 312 aa15.42■□□□□ 0.06
SQSTM1-216ENST00000626660 C11orf54Q9H0W9 315 aaPredicted RBP15.42■□□□□ 0.06
SQSTM1-216ENST00000626660 GHITMQ9H3K2 345 aa15.42■□□□□ 0.06
SQSTM1-216ENST00000626660 A6NHS1 94 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 TXNL1O43396 289 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 RNASE1P07998 156 aaKnown RBP15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 ZNF137PP52743 207 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 MRPS10P82664 201 aaKnown RBP15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 ZNF816Q0VGE8 651 aaPredicted RBP15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 PYHIN1Q6K0P9 492 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 TGIF2LXQ8IUE1 241 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 ZFAND2BQ8WV99 257 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 ABHD1Q96SE0 405 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 TOLLIPQ9H0E2 274 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 PARP12Q9H0J9 701 aaKnown RBP15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 NECAP2Q9NVZ3 263 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 PIPOXQ9P0Z9 390 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 VPREB3Q9UKI3 123 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 ANAPC10Q9UM13 185 aa15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 RBM7Q9Y580 266 aaKnown RBP15.41■□□□□ 0.06
SQSTM1-216ENST00000626660 RAB29O14966 203 aa15.4■□□□□ 0.06
SQSTM1-216ENST00000626660 LANCL1O43813 399 aa15.4■□□□□ 0.06
SQSTM1-216ENST00000626660 RCVRNP35243 200 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms