RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 ZNF251Q9BRH9 671 aa19.34■□□□□ 0.69
PTPRF-216ENST00000617451 ANKRD60Q9BZ19 345 aa19.34■□□□□ 0.69
PTPRF-216ENST00000617451 KCNIP1Q9NZI2 227 aa19.34■□□□□ 0.69
PTPRF-216ENST00000617451 JPT1Q9UK76 154 aa19.34■□□□□ 0.69
PTPRF-216ENST00000617451 UBE2QL1A1L167 161 aa19.33■□□□□ 0.68
PTPRF-216ENST00000617451 NBR2O15453 112 aa19.33■□□□□ 0.68
PTPRF-216ENST00000617451 PPP1CCP36873 323 aaKnown RBP19.33■□□□□ 0.68
PTPRF-216ENST00000617451 HTD2P86397 168 aa19.33■□□□□ 0.68
PTPRF-216ENST00000617451 C5orf64Q2M2E5 130 aa19.33■□□□□ 0.68
PTPRF-216ENST00000617451 MINDY2Q8NBR6 621 aa19.33■□□□□ 0.68
PTPRF-216ENST00000617451 DCUN1D4Q92564 292 aa19.33■□□□□ 0.68
PTPRF-216ENST00000617451 CHCHD3Q9NX63 227 aaKnown RBP19.33■□□□□ 0.68
PTPRF-216ENST00000617451 SMPD3Q9NY59 655 aaPredicted RBP19.33■□□□□ 0.68
PTPRF-216ENST00000617451 CRTAPO75718 401 aaPredicted RBP19.32■□□□□ 0.68
PTPRF-216ENST00000617451 BLVRBP30043 206 aaPredicted RBP19.32■□□□□ 0.68
PTPRF-216ENST00000617451 FAM27D1Q5T7N8 215 aa19.32■□□□□ 0.68
PTPRF-216ENST00000617451 LIN54Q6MZP7 749 aa19.32■□□□□ 0.68
PTPRF-216ENST00000617451 ZNF833PQ6ZTB9 187 aa19.32■□□□□ 0.68
PTPRF-216ENST00000617451 NPBQ8NG41 125 aa19.32■□□□□ 0.68
PTPRF-216ENST00000617451 MRPL30Q8TCC3 161 aaKnown RBP19.32■□□□□ 0.68
PTPRF-216ENST00000617451 TMEM80Q96HE8 168 aa19.32■□□□□ 0.68
PTPRF-216ENST00000617451 SACSQ9NZJ4 4579 aa19.31■□□□□ 0.68
PTPRF-216ENST00000617451 OVOL1O14753 267 aa19.31■□□□□ 0.68
PTPRF-216ENST00000617451 YPEL1O60688 119 aa19.31■□□□□ 0.68
PTPRF-216ENST00000617451 MAS1P04201 325 aa19.31■□□□□ 0.68
PTPRF-216ENST00000617451 LY6G6FQ5SQ64 297 aa19.31■□□□□ 0.68
PTPRF-216ENST00000617451 SBSPONQ8IVN8 264 aa19.31■□□□□ 0.68
PTPRF-216ENST00000617451 YPEL2Q96QA6 119 aa19.31■□□□□ 0.68
PTPRF-216ENST00000617451 ISYNA1Q9NPH2 558 aa19.31■□□□□ 0.68
PTPRF-216ENST00000617451 PDCD6O75340 191 aa19.3■□□□□ 0.68
PTPRF-216ENST00000617451 CAPGP40121 348 aa19.3■□□□□ 0.68
PTPRF-216ENST00000617451 OR3A3P47888 321 aa19.3■□□□□ 0.68
PTPRF-216ENST00000617451 MED21Q13503 144 aa19.3■□□□□ 0.68
PTPRF-216ENST00000617451 MUC7Q8TAX7 377 aa19.3■□□□□ 0.68
PTPRF-216ENST00000617451 DERL3Q96Q80 235 aa19.3■□□□□ 0.68
PTPRF-216ENST00000617451 TENM2Q9NT68 2774 aa19.3■□□□□ 0.68
PTPRF-216ENST00000617451 RGS11O94810 467 aa19.29■□□□□ 0.68
PTPRF-216ENST00000617451 NDUFA3O95167 84 aa19.29■□□□□ 0.68
PTPRF-216ENST00000617451 DOC2BQ14184 412 aa19.29■□□□□ 0.68
PTPRF-216ENST00000617451 C19orf54Q5BKX5 351 aa19.29■□□□□ 0.68
PTPRF-216ENST00000617451 C6orf141Q5SZD1 244 aa19.29■□□□□ 0.68
PTPRF-216ENST00000617451 GALMQ96C23 342 aa19.29■□□□□ 0.68
PTPRF-216ENST00000617451 RCHY1Q96PM5 261 aa19.29■□□□□ 0.68
PTPRF-216ENST00000617451 ALX4Q9H161 411 aaPredicted RBP19.29■□□□□ 0.68
PTPRF-216ENST00000617451 KIAA1456Q9P272 454 aa19.29■□□□□ 0.68
PTPRF-216ENST00000617451 SAA2-SAA4A0A096LPE2 208 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 SAA2P0DJI9 122 aaPredicted RBP19.28■□□□□ 0.68
PTPRF-216ENST00000617451 NDPQ00604 133 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 CASC10Q5T4H9 136 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 DLX4Q92988 240 aaPredicted RBP19.28■□□□□ 0.68
PTPRF-216ENST00000617451 FAM46BQ96A09 425 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 UQCC2Q9BRT2 126 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 CST11Q9H112 138 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 ERGIC3Q9Y282 383 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 FBXO7Q9Y3I1 522 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 LRRC42Q9Y546 428 aa19.28■□□□□ 0.68
PTPRF-216ENST00000617451 PNMA8CA0A1B0GUJ8 204 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 SOX15O60248 233 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 SAP30O75446 220 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 SPNP16150 400 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 CRIP2P52943 208 aaPredicted RBP19.27■□□□□ 0.68
PTPRF-216ENST00000617451 TAS2R43P59537 309 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 NKAIN3Q8N8D7 197 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 OR2AK2Q8NG84 335 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 TOLLIPQ9H0E2 274 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 IFI27L2Q9H2X8 130 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 TPSG1Q9NRR2 321 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 GHRLQ9UBU3 117 aa19.27■□□□□ 0.68
PTPRF-216ENST00000617451 LINC01619G3V211 115 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 BAG2O95816 211 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 SLURP1P55000 103 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 GABPB1Q06547 395 aaPredicted RBP19.26■□□□□ 0.67
PTPRF-216ENST00000617451 ST3GAL4Q11206 333 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 ECSCRQ19T08 205 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 ZNF660Q6AZW8 331 aaPredicted RBP19.26■□□□□ 0.67
PTPRF-216ENST00000617451 FAM71F2Q6NXP2 309 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 OVCH2Q7RTZ1 564 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 GGHQ92820 318 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 SULT4A1Q9BR01 284 aa19.26■□□□□ 0.67
PTPRF-216ENST00000617451 FOXA2Q9Y261 457 aaPredicted RBP19.26■□□□□ 0.67
PTPRF-216ENST00000617451 A0A1W2PN81 502 aa19.25■□□□□ 0.67
PTPRF-216ENST00000617451 CHRNA7P36544 502 aa19.25■□□□□ 0.67
PTPRF-216ENST00000617451 HMGN3Q15651 99 aa19.25■□□□□ 0.67
PTPRF-216ENST00000617451 LRRC36Q1X8D7 754 aa19.25■□□□□ 0.67
PTPRF-216ENST00000617451 CD1AP06126 327 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 LGALS1P09382 135 aaKnown RBP19.24■□□□□ 0.67
PTPRF-216ENST00000617451 FRMD6-AS1P0C7T7 363 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 GP9P14770 177 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 CELP19835 753 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 CX3CL1P78423 397 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 ACSM6Q6P461 480 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 FAM131AQ6UXB0 335 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 TCTEX1D1Q8N7M0 179 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 CASTOR1Q8WTX7 329 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 CYGBQ8WWM9 190 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 NEDD4LQ96PU5 975 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 FBXL15Q9H469 300 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 PIPOXQ9P0Z9 390 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 STEAP1Q9UHE8 339 aa19.24■□□□□ 0.67
PTPRF-216ENST00000617451 NUBP2Q9Y5Y2 271 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms