RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 OR3A3P47888 321 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 ERVFRD-1P60508 538 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 HLA-DRB3P79483 266 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 FOXL1Q12952 345 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 CDK10Q15131 360 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 RBMS2Q15434 407 aaKnown RBP9.4□□□□□ -0.9
LINC00539-204ENST00000608957 GRK1Q15835 563 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 RSBN1Q5VWQ0 802 aaPredicted RBP9.4□□□□□ -0.9
LINC00539-204ENST00000608957 SLC35E4Q6ICL7 350 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 ZNF880Q6PDB4 577 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 IDO2Q6ZQW0 420 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 C17orf107Q6ZR85 190 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 LDLRAD3Q86YD5 345 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 ARRDC1Q8N5I2 433 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 C11orf42Q8N5U0 333 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 OR5AP2Q8NGF4 316 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 C17orf50Q8WW18 174 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 AJUBAQ96IF1 538 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 SNX22Q96L94 193 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 MARVELD1Q9BSK0 173 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 ZNF747Q9BV97 191 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 NUDT15Q9NV35 164 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 EHFQ9NZC4 300 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 SCP2D1Q9UJQ7 156 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 MGAT4AQ9UM21 535 aa9.4□□□□□ -0.9
LINC00539-204ENST00000608957 TRRAPQ9Y4A5 3859 aa9.4□□□□□ -0.91
LINC00539-204ENST00000608957 TRAV6A0A075B6T7 132 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 M0R1W7 72 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 NPFFO15130 113 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 NDUFB6O95139 128 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 H2AFB2P0C5Z0 115 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 KIR2DS4P43632 304 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 IER3P46695 156 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 PAX5Q02548 391 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 ZNF273Q14593 569 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 KIR2DS1Q14954 304 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 SCGB2B2Q4G0G5 96 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 C1orf122Q6ZSJ8 110 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 TMEM17Q86X19 198 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 FAM185AQ8N0U4 392 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 ZNF561Q8N587 486 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 COQ2Q96H96 371 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 GINS4Q9BRT9 223 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 NECAP2Q9NVZ3 263 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 ING3Q9NXR8 418 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 C1RLQ9NZP8 487 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 ZNRD1Q9P1U0 126 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 CMYA5Q8N3K9 4069 aa9.39□□□□□ -0.91
LINC00539-204ENST00000608957 TRBV23-1A0A0A0MS06 115 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 TRDCB7Z8K6 153 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 INMT-MINDY4F8WBC2 141 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 K7N7A8 449 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 SDCBPO00560 298 aaPredicted RBP9.38□□□□□ -0.91
LINC00539-204ENST00000608957 MGST3O14880 152 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 ARPC1BO15143 372 aaKnown RBP9.38□□□□□ -0.91
LINC00539-204ENST00000608957 FABP7O15540 132 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 TK1P04183 234 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 GSTT2P0CG29 244 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 CCL3L1P16619 93 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 SAA4P35542 130 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 RAG2P55895 527 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 DLX6P56179 175 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 TSPAN5P62079 268 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 AESQ08117 197 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 EDDM3AQ14507 147 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 KRBOX4Q5JUW0 171 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 TMEM200BQ69YZ2 307 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 TCF23Q7RTU1 214 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 OVCH2Q7RTZ1 564 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 TMEM86BQ8N661 226 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 OR13C8Q8NGS7 320 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 CCDC107Q8WV48 283 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 SSMEM1Q8WWF3 244 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 SLC25A21Q9BQT8 299 aaPredicted RBP9.38□□□□□ -0.91
LINC00539-204ENST00000608957 FAM234AQ9H0X4 552 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 MBNL3Q9NUK0 354 aaKnown RBP9.38□□□□□ -0.91
LINC00539-204ENST00000608957 KIF25Q9UIL4 384 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 TRAPPC2LQ9UL33 140 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 POMT1Q9Y6A1 747 aa9.38□□□□□ -0.91
LINC00539-204ENST00000608957 NBEAL1Q6ZS30 2694 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 MEIKINA0A087WXM9 373 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 MEX3AA1L020 520 aaKnown RBP9.37□□□□□ -0.91
LINC00539-204ENST00000608957 GPR137BO60478 399 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 PEX14O75381 377 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 DHFRP00374 187 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 OR5H8P0DN80 308 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 RCC1P18754 421 aaPredicted RBP9.37□□□□□ -0.91
LINC00539-204ENST00000608957 PAX6P26367 422 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 GLP1RP43220 463 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 UBE2E1P51965 193 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 KRTAP10-3P60369 221 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 RPL31P62899 125 aaKnown RBP9.37□□□□□ -0.91
LINC00539-204ENST00000608957 SRSF4Q08170 494 aaKnown RBP9.37□□□□□ -0.91
LINC00539-204ENST00000608957 HMGN3Q15651 99 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 TATDN3Q17R31 274 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 LHFPL1Q86WI0 220 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 OR5D13Q8NGL4 314 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 OR4A4PQ8NGN8 299 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 CABLES2Q9BTV7 478 aa9.37□□□□□ -0.91
LINC00539-204ENST00000608957 METTL8Q9H825 291 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms