RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 P2RY14Q15391 338 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 SSX1Q16384 188 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 ZNF833PQ6ZTB9 187 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 C8orf86Q6ZUL3 223 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 OR2W3Q7Z3T1 314 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 FOXRED2Q8IWF2 684 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 CNBD2Q96M20 576 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 NEDD4LQ96PU5 975 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 YPEL2Q96QA6 119 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 S1PR3Q99500 378 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 MGLLQ99685 303 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 NABP2Q9BQ15 211 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 HDHD3Q9BSH5 251 aaPredicted RBP10.27□□□□□ -0.77
LIG1-212ENST00000596549 MRPL20Q9BYC9 149 aaKnown RBP10.27□□□□□ -0.77
LIG1-212ENST00000596549 PARP12Q9H0J9 701 aaKnown RBP10.27□□□□□ -0.77
LIG1-212ENST00000596549 NECAP2Q9NVZ3 263 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 KCNIP1Q9NZI2 227 aa10.27□□□□□ -0.77
LIG1-212ENST00000596549 AK6Q9Y3D8 172 aaKnown RBP10.27□□□□□ -0.77
LIG1-212ENST00000596549 SHISA3A0PJX4 238 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 CALRP27797 417 aaKnown RBP10.26□□□□□ -0.77
LIG1-212ENST00000596549 BLVRBP30043 206 aaPredicted RBP10.26□□□□□ -0.77
LIG1-212ENST00000596549 CLDN12P56749 244 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 CFHR3Q02985 330 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 PLA2G7Q13093 441 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 TRAM1Q15629 374 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 LY6G6FQ5SQ64 297 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 STEAP3Q658P3 488 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 LCNL1Q6ZST4 164 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 REC114Q7Z4M0 266 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 PLGRKTQ9HBL7 147 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 AK3Q9UIJ7 227 aa10.26□□□□□ -0.77
LIG1-212ENST00000596549 NOTCH3Q9UM47 2321 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 AP4M1O00189 453 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 ST8SIA5O15466 376 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 ARL6IP5O75915 188 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 SLC2A2P11168 524 aaPredicted RBP10.25□□□□□ -0.77
LIG1-212ENST00000596549 ARSBP15848 533 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 PSMA1P25786 263 aaKnown RBP10.25□□□□□ -0.77
LIG1-212ENST00000596549 CNTFRP26992 372 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 OR3A3P47888 321 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 THBS3P49746 956 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 MRPL41Q8IXM3 137 aaKnown RBP10.25□□□□□ -0.77
LIG1-212ENST00000596549 FAM89BQ8N5H3 189 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 KLHL30-AS1Q8NEE0 82 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 OR51D1Q8NGF3 324 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 OR8H1Q8NGG4 311 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 IL1F10Q8WWZ1 152 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 GALMQ96C23 342 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 RITA1Q96K30 269 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 ZNF251Q9BRH9 671 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 VCX3BQ9H321 246 aa10.25□□□□□ -0.77
LIG1-212ENST00000596549 TRBV6-6A0A0A6YYG2 114 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 LDLRAD4O15165 306 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 RPLP1P05386 114 aaKnown RBP10.24□□□□□ -0.77
LIG1-212ENST00000596549 HSPA13P48723 471 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 TMEM50BP56557 158 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 SLC35B1P78383 322 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 HLA-DRB3P79483 266 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 MMDQ15546 238 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 RAB11BQ15907 218 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 MOB1BQ7L9L4 216 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 ZNF367Q7RTV3 350 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 COMMD1Q8N668 190 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 OR2AK2Q8NG84 335 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 SETD6Q8TBK2 473 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 MRAPQ8TCY5 172 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 RCC1LQ96I51 464 aaKnown RBP10.24□□□□□ -0.77
LIG1-212ENST00000596549 P2RX4Q99571 388 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 RASL11BQ9BPW5 248 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 URM1Q9BTM9 101 aaKnown RBP10.24□□□□□ -0.77
LIG1-212ENST00000596549 CHMP1AQ9HD42 196 aaPredicted RBP10.24□□□□□ -0.77
LIG1-212ENST00000596549 ACOT13Q9NPJ3 140 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 OR1A1Q9P1Q5 309 aa10.24□□□□□ -0.77
LIG1-212ENST00000596549 TMEM272A0A1B0GTI8 110 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 RGS11O94810 467 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 VEGFCP49767 419 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 OR10A3P58181 314 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 KRTAP10-11P60412 298 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 ACTBP60709 375 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 RPL39P5Q59GN2 51 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 PLAC9Q5JTB6 97 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 HES5Q5TA89 166 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 FAM71F2Q6NXP2 309 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 CD200R1LQ6Q8B3 271 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 RNF152Q8N8N0 203 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 ARHGAP5-AS1Q96IT6 56 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 DUX3Q96PT4 197 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 PECRQ9BY49 303 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 ZFP57Q9NU63 452 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 PLEKHJ1Q9NW61 149 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 NDUFB11Q9NX14 153 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 ABRACLQ9P1F3 81 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 ZNF107Q9UII5 783 aaPredicted RBP10.23□□□□□ -0.77
LIG1-212ENST00000596549 ZNF580Q9UK33 172 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 HSF4Q9ULV5 492 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 RAB26Q9ULW5 256 aa10.23□□□□□ -0.77
LIG1-212ENST00000596549 IGKV1-6A0A0C4DH72 117 aa10.22□□□□□ -0.77
LIG1-212ENST00000596549 NUDT19A8MXV4 375 aa10.22□□□□□ -0.77
LIG1-212ENST00000596549 ATP6V0E1O15342 81 aa10.22□□□□□ -0.77
LIG1-212ENST00000596549 NDUFA3O95167 84 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms