RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 KIR2DS1Q14954 304 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 C11orf88Q6PI97 169 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 SHISA2Q6UWI4 295 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 DRAM1Q8N682 238 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 OR2AK2Q8NG84 335 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 OR56B4Q8NH76 319 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 OR2T6Q8NHC8 308 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 RTN4IP1Q8WWV3 396 aaPredicted RBP9.54□□□□□ -0.88
LIG3-213ENST00000590630 WFDC12Q8WWY7 111 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 CFHR4Q92496 578 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 PHF21AQ96BD5 680 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 SPATA2Q9UM82 520 aa9.54□□□□□ -0.88
LIG3-213ENST00000590630 A0A0A6YYH2 397 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 IGHV1-3A0A0C4DH29 117 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 A6NJ64 397 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 TRDCB7Z8K6 153 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 HSPA12AO43301 675 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 OR2F2O95006 317 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 DIRAS3O95661 229 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 GSTP1P09211 210 aaKnown RBP9.53□□□□□ -0.88
LIG3-213ENST00000590630 TALDO1P37837 337 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 PROK1P58294 105 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 NCS1P62166 190 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 PITPNAQ00169 270 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 ARFRP1Q13795 201 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 SRSF7Q16629 238 aaKnown RBP eCLIP9.53□□□□□ -0.88
LIG3-213ENST00000590630 CDNFQ49AH0 187 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 HACD4Q5VWC8 232 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 C5orf24Q7Z6I8 188 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 ANKRD13BQ86YJ7 626 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 TGIF2LXQ8IUE1 241 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 LYG1Q8N1E2 194 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 Q8N2B8 174 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 OR4A4PQ8NGN8 299 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 OR5H6Q8NGV6 325 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 CAPSLQ8WWF8 208 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 SLC25A46Q96AG3 418 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 KCTD12Q96CX2 325 aaKnown RBP9.53□□□□□ -0.88
LIG3-213ENST00000590630 SLC25A38Q96DW6 304 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 RBM14Q96PK6 669 aaKnown RBP9.53□□□□□ -0.88
LIG3-213ENST00000590630 PRSS22Q9GZN4 317 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 SLC23A1Q9UHI7 598 aa9.53□□□□□ -0.88
LIG3-213ENST00000590630 M0QZK8 103 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 ITGB1BP1O14713 200 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 FABP7O15540 132 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 LANCL1O43813 399 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 GABARAPO95166 117 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 TFAP2AP05549 437 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 SNRNP70P08621 437 aaKnown RBP9.52□□□□□ -0.89
LIG3-213ENST00000590630 SCTP09683 121 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 DTYMKP23919 212 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 REG1BP48304 166 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 ALDH3B2P48448 385 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 SERPINB10P48595 397 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 VBP1P61758 197 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 PNLIPRP3Q17RR3 467 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 Q6ZS49 121 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 GPR141Q7Z602 305 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 MOB3BQ86TA1 216 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 IZUMO1Q8IYV9 350 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 EDARADDQ8WWZ3 215 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 SLC25A33Q9BSK2 321 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 GHITMQ9H3K2 345 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 ZNF702PQ9H963 129 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 BATF3Q9NR55 127 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 VWFP04275 2813 aa9.52□□□□□ -0.89
LIG3-213ENST00000590630 TMEM235A6NFC5 223 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 CD1BP29016 333 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 CEACAM6P40199 344 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 EBI3Q14213 229 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 HES1Q14469 280 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 HERPUD1Q15011 391 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 CTF1Q16619 201 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 ZNF260Q3ZCT1 412 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 FAM71F2Q6NXP2 309 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 ODF3L1Q8IXM7 274 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 CABLES2Q9BTV7 478 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 ABCG5Q9H222 651 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 DCSTAMPQ9H295 470 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 IFI27L2Q9H2X8 130 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 DIABLOQ9NR28 239 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 PIPOXQ9P0Z9 390 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 OR1A1Q9P1Q5 309 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 ZNF230Q9UIE0 474 aaPredicted RBP9.51□□□□□ -0.89
LIG3-213ENST00000590630 MOB4Q9Y3A3 225 aa9.51□□□□□ -0.89
LIG3-213ENST00000590630 SAA2-SAA4A0A096LPE2 208 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 IGKV1-6A0A0C4DH72 117 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 RAB29O14966 203 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 IGKV1D-33P01593 117 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 IGKV1-33P01594 117 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 SAA2P0DJI9 122 aaPredicted RBP9.5□□□□□ -0.89
LIG3-213ENST00000590630 TMEM11P17152 192 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 GNG2P59768 71 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 BLCAPP62952 87 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 FBLN7Q53RD9 439 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 UBE2NLQ5JXB2 153 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 GPR107Q5VW38 600 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 ZNF833PQ6ZTB9 187 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 OR2T10Q8NGZ9 312 aa9.5□□□□□ -0.89
LIG3-213ENST00000590630 OR10J5Q8NHC4 309 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms