RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CT45A3Q8NHU0 189 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 MRPL30Q8TCC3 161 aaKnown RBP8.34□□□□□ -1.07
LIG3-212ENST00000590181 FAM46BQ96A09 425 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 FAM3DQ96BQ1 224 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 EAF1Q96JC9 268 aaPredicted RBP8.34□□□□□ -1.07
LIG3-212ENST00000590181 CNBD2Q96M20 576 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 S1PR3Q99500 378 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 FAAP24Q9BTP7 215 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 ABHD14AQ9BUJ0 271 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 ABCG5Q9H222 651 aa8.34□□□□□ -1.07
LIG3-212ENST00000590181 TCRBV4S1A1TA0A5B7 111 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 PSMB11A5LHX3 300 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 SERPINE3A8MV23 424 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 RBBP9O75884 186 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 CD28P10747 220 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 RAB6AP20340 208 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 ZBTB25P24278 435 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 SCAND1P57086 179 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 FABP5Q01469 135 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 TAGLNQ01995 201 aaKnown RBP8.33□□□□□ -1.08
LIG3-212ENST00000590181 UNC119Q13432 240 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 SSX1Q16384 188 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 FAM27D1Q5T7N8 215 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 UBE2UQ5VVX9 321 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 TEX38Q6PEX7 206 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 SLC35E3Q7Z769 313 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 LEAP2Q969E1 77 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 PHF21AQ96BD5 680 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 R3HDM4Q96D70 268 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 CITED2Q99967 270 aaPredicted RBP8.33□□□□□ -1.08
LIG3-212ENST00000590181 RASL11BQ9BPW5 248 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 SULT4A1Q9BR01 284 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 C12orf4Q9NQ89 552 aa8.33□□□□□ -1.08
LIG3-212ENST00000590181 AURKAIP1Q9NWT8 199 aaPredicted RBP8.33□□□□□ -1.08
LIG3-212ENST00000590181 TRAV39A0A0B4J263 110 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 IFITM5A6NNB3 132 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 NCBP2LA6PVI3 153 aaKnown RBP8.32□□□□□ -1.08
LIG3-212ENST00000590181 ELANEP08246 267 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 RAB3BP20337 219 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 CD24P25063 80 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 ZNF134P52741 427 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 RPS25P62851 125 aaKnown RBP8.32□□□□□ -1.08
LIG3-212ENST00000590181 INSL4Q14641 139 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 KIR2DS1Q14954 304 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 PNLIPRP3Q17RR3 467 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 C2orf76Q3KRA6 126 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 C9orf152Q5JTZ5 239 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 NKAPLQ5M9Q1 402 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 C6orf201Q7Z4U5 140 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 PRR18Q8N4B5 295 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 C11orf44Q8N8P7 122 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.32□□□□□ -1.08
LIG3-212ENST00000590181 OR1L1Q8NH94 360 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 RCC1LQ96I51 464 aaKnown RBP8.32□□□□□ -1.08
LIG3-212ENST00000590181 MCRIP2Q9BUT9 160 aaKnown RBP8.32□□□□□ -1.08
LIG3-212ENST00000590181 TOLLIPQ9H0E2 274 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 LPAR5Q9H1C0 372 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 CHMP1AQ9HD42 196 aaPredicted RBP8.32□□□□□ -1.08
LIG3-212ENST00000590181 NECAP2Q9NVZ3 263 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 ZNF581Q9P0T4 197 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 SLC23A1Q9UHI7 598 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 DNAH9Q9NYC9 4486 aa8.32□□□□□ -1.08
LIG3-212ENST00000590181 OR5H14A6NHG9 310 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 LDLRAD4O15165 306 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 HSPA12AO43301 675 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 IGHV3-7P01780 117 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 IGF1P05019 195 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 PF4V1P10720 104 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 JUNBP17275 347 aaPredicted RBP8.31□□□□□ -1.08
LIG3-212ENST00000590181 SOX6P35712 828 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 PITPNAQ00169 270 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 HNF4GQ14541 408 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 NSUN5P1Q3KNT7 163 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 VAX1Q5SQQ9 334 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 Q6ZS46 218 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 ZNF833PQ6ZTB9 187 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 LYG1Q8N1E2 194 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 FAM71E2Q8N5Q1 922 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 RNF152Q8N8N0 203 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 Q8N9W7 124 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 OR4A4PQ8NGN8 299 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 SGCDQ92629 289 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 GAB2Q9UQC2 676 aa8.31□□□□□ -1.08
LIG3-212ENST00000590181 AK6Q9Y3D8 172 aaKnown RBP8.31□□□□□ -1.08
LIG3-212ENST00000590181 IGHV3-43A0A0B4J1X8 118 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 A0A1W2PPE3 182 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 FOXI3A8MTJ6 420 aaPredicted RBP8.3□□□□□ -1.08
LIG3-212ENST00000590181 ADARB2-AS1A8MUL3 147 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 TRDCB7Z8K6 153 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 PF4P02776 101 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 CD3GP09693 182 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 IGHV3-43DP0DP04 118 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 CD33P20138 364 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 GPR12P47775 334 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 TMEM50BP56557 158 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 LSAMPQ13449 338 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 FOXE3Q13461 319 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 DCTN2Q13561 401 aaKnown RBP8.3□□□□□ -1.08
LIG3-212ENST00000590181 DIAPH2-AS1Q14236 149 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 OXLD1Q5BKU9 147 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms