RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ZNF485Q8NCK3 441 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 DCUN1D4Q92564 292 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 RCHY1Q96PM5 261 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 YPEL2Q96QA6 119 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 ZNF251Q9BRH9 671 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 MRPL20Q9BYC9 149 aaKnown RBP9.2□□□□□ -0.94
LIG3-209ENST00000586435 ANKRD60Q9BZ19 345 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 CST11Q9H112 138 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 PARP11Q9NR21 331 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 KCNIP1Q9NZI2 227 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 WSB1Q9Y6I7 421 aa9.2□□□□□ -0.94
LIG3-209ENST00000586435 PDCD6O75340 191 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 CNTFRP26992 372 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 BLVRBP30043 206 aaPredicted RBP9.19□□□□□ -0.94
LIG3-209ENST00000586435 MED21Q13503 144 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 GNMTQ14749 295 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 C6orf141Q5SZD1 244 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 LIN54Q6MZP7 749 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 SBSPONQ8IVN8 264 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 PQLC1Q8N2U9 271 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 NKAIN3Q8N8D7 197 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 ZNF555Q8NEP9 628 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 OR52L2PQ8NGH6 319 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 MRPL30Q8TCC3 161 aaKnown RBP9.19□□□□□ -0.94
LIG3-209ENST00000586435 RITA1Q96K30 269 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 OR14A2Q96R54 314 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 SELENOIQ9C0D9 397 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 BANF2Q9H503 90 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 SMPD3Q9NY59 655 aaPredicted RBP9.19□□□□□ -0.94
LIG3-209ENST00000586435 KIAA1456Q9P272 454 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 LRRC42Q9Y546 428 aa9.19□□□□□ -0.94
LIG3-209ENST00000586435 SAA2-SAA4A0A096LPE2 208 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 UBE2QL1A1L167 161 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 LINC01619G3V211 115 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 SAP30O75446 220 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 CRTAPO75718 401 aaPredicted RBP9.18□□□□□ -0.94
LIG3-209ENST00000586435 MAS1P04201 325 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 LGALS1P09382 135 aaKnown RBP9.18□□□□□ -0.94
LIG3-209ENST00000586435 SAA2P0DJI9 122 aaPredicted RBP9.18□□□□□ -0.94
LIG3-209ENST00000586435 PPP1CCP36873 323 aaKnown RBP9.18□□□□□ -0.94
LIG3-209ENST00000586435 CAPGP40121 348 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 TAS2R43P59537 309 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 NDPQ00604 133 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 DOC2BQ14184 412 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 HMGN3Q15651 99 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 ZNF660Q6AZW8 331 aaPredicted RBP9.18□□□□□ -0.94
LIG3-209ENST00000586435 OR6Q1Q8NGQ2 317 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 THRSPQ92748 146 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 GALMQ96C23 342 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 TMEM80Q96HE8 168 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 DERL3Q96Q80 235 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 OR5B12Q96R08 314 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 UQCC2Q9BRT2 126 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 TOLLIPQ9H0E2 274 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 IFI27L2Q9H2X8 130 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 S100A14Q9HCY8 104 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 TPSG1Q9NRR2 321 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 GHRLQ9UBU3 117 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 CLEC2DQ9UHP7 191 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 ERGIC3Q9Y282 383 aa9.18□□□□□ -0.94
LIG3-209ENST00000586435 DYNC2H1Q8NCM8 4307 aaKnown RBP9.18□□□□□ -0.94
LIG3-209ENST00000586435 SOX15O60248 233 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 CD1AP06126 327 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 OR8U9P0C7N5 309 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 FRMD6-AS1P0C7T7 363 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 GP9P14770 177 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 SPNP16150 400 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 GABPB1Q06547 395 aaPredicted RBP9.17□□□□□ -0.94
LIG3-209ENST00000586435 PYHIN1Q6K0P9 492 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 ACSM6Q6P461 480 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 CD200R1LQ6Q8B3 271 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 ZFP41Q8N8Y5 198 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 OR2AK2Q8NG84 335 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 DLX4Q92988 240 aaPredicted RBP9.17□□□□□ -0.94
LIG3-209ENST00000586435 GHITMQ9H3K2 345 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 PIPOXQ9P0Z9 390 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 FOXA2Q9Y261 457 aaPredicted RBP9.17□□□□□ -0.94
LIG3-209ENST00000586435 FBXO7Q9Y3I1 522 aa9.17□□□□□ -0.94
LIG3-209ENST00000586435 TENM2Q9NT68 2774 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 A0A1W2PN81 502 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 A0A1W2PPK0 400 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 OR5H14A6NHG9 310 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 RRHO14718 337 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 RAB29O14966 203 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 ARPC1BO15143 372 aaKnown RBP9.16□□□□□ -0.94
LIG3-209ENST00000586435 UBBP0CG47 229 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 MAPK3P27361 379 aaPredicted RBP9.16□□□□□ -0.94
LIG3-209ENST00000586435 CHRNA7P36544 502 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 OR3A3P47888 321 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 SLURP1P55000 103 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 CX3CL1P78423 397 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 ECSCRQ19T08 205 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 FAM131AQ6UXB0 335 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 CYYR1Q96J86 154 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 ALX4Q9H161 411 aaPredicted RBP9.16□□□□□ -0.94
LIG3-209ENST00000586435 ZMAT4Q9H898 229 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 STEAP1Q9UHE8 339 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 RNF150Q9ULK6 438 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 NUBP2Q9Y5Y2 271 aa9.16□□□□□ -0.94
LIG3-209ENST00000586435 IGHV4OR15-8A0A075B7B6 117 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms