RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 AZGP1P25311 298 aaKnown RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 HTR1DP28221 377 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 POU3F4P49335 361 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 RBP2P50120 134 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 SNU13P55769 128 aaKnown RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 OR12D2P58182 307 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 ZP1P60852 638 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 RAP2BP61225 183 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 BDH1Q02338 343 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 AESQ08117 197 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 ST3GAL4Q11206 333 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 IL18Q14116 193 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 CDK5R1Q15078 307 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 SPHARQ15513 63 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 TRAM1Q15629 374 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 C17orf58Q2M2W7 97 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 Q5BKY6 102 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 SPIN3Q5JUX0 258 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 C11orf87Q6NUJ2 197 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 HEPN1Q6WQI6 88 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 C16orf82Q7Z2V1 217 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 Q8IYB0 196 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 ENTHD1Q8IYW4 607 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 ABHD12Q8N2K0 398 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 C12orf45Q8N5I9 185 aaPredicted RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 CCDC54Q8NEL0 328 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 PP6455Q8WZ26 134 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 GGHQ92820 318 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 RFT1Q96AA3 541 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 FGGYQ96C11 551 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 RBM14Q96PK6 669 aaKnown RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 NEDD4LQ96PU5 975 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 SPACA5Q96QH8 159 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 SDHCQ99643 169 aaPredicted RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 SEC22CQ9BRL7 303 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 ZNF649Q9BS31 505 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 SLC25A33Q9BSK2 321 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 DPCDQ9BVM2 203 aaPredicted RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 COMMD4Q9H0A8 199 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 OR51E2Q9H255 320 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 PLEKHA1Q9HB21 404 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 NDUFB11Q9NX14 153 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 H2AFY2Q9P0M6 372 aaPredicted RBP5.34□□□□□ -1.55
VPS53-213ENST00000572334 DPM3Q9P2X0 92 aa5.34□□□□□ -1.55
VPS53-213ENST00000572334 STAB2Q8WWQ8 2551 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 MEIKINA0A087WXM9 373 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 RAB19A4D1S5 217 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 OR4C45A6NMZ5 311 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 BUB1B-PAK6H3BSN5 160 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 SLC33A1O00400 549 aaPredicted RBP5.33□□□□□ -1.56
VPS53-213ENST00000572334 PDCD5O14737 125 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 ST8SIA5O15466 376 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 SSNA1O43805 119 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 OR2F2O95006 317 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 HTR3BO95264 441 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 CSN2P05814 226 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 FGF2P09038 288 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 H2AFB1P0C5Y9 115 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 H2AFB2P0C5Z0 115 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 CD33P20138 364 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 PVALBP20472 110 aaPredicted RBP5.33□□□□□ -1.56
VPS53-213ENST00000572334 FGF9P31371 208 aaPredicted RBP5.33□□□□□ -1.56
VPS53-213ENST00000572334 ATP1B3P54709 279 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 MTCP1P56278 107 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 RELQ04864 619 aaPredicted RBP5.33□□□□□ -1.56
VPS53-213ENST00000572334 EGFEM1PQ0D2K5 195 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 DIAPH2-AS1Q14236 149 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 ZNF79Q15937 498 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 HLA-DRB5Q30154 266 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 ABCA11PQ4W5N1 156 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 FAM209BQ5JX69 171 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 TPTE2P1Q5T6R2 138 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 LAMTOR1Q6IAA8 161 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 LAIR2Q6ISS4 152 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 C18orf65Q6ZTR6 163 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 LHFPL2Q6ZUX7 228 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 RTN4RL2Q86UN3 420 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 LINC00482Q8N8I6 264 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 OR5D18Q8NGL1 313 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 OR8J1Q8NGP2 316 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 OR56B4Q8NH76 319 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 TCTEX1D2Q8WW35 142 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 MARC2Q969Z3 335 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 NKX6-2Q9C056 277 aaPredicted RBP5.33□□□□□ -1.56
VPS53-213ENST00000572334 OR51M1Q9H341 326 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 OR51J1Q9H342 316 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 TMEM138Q9NPI0 162 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 TAS2R3Q9NYW6 316 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 ZNF581Q9P0T4 197 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 GNG8Q9UK08 70 aa5.33□□□□□ -1.56
VPS53-213ENST00000572334 TSSC4Q9Y5U2 329 aaPredicted RBP5.33□□□□□ -1.56
VPS53-213ENST00000572334 TRAV24A0A0B4J272 114 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 A0A1W2PPI3 338 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 RPS10-NUDT3A0A1W2PQS6 291 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 TCRBV4S1A1TA0A5B7 111 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 ODAMA1E959 279 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 HMSDA8MTL9 139 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 SH2D1BO14796 132 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 WBP4O75554 376 aaKnown RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 CRTAPO75718 401 aaPredicted RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms