RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 PITPNAQ00169 270 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 C6orf183Q5T699 404 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 OR2G6Q5TZ20 316 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 STEAP3Q658P3 488 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 ZNF833PQ6ZTB9 187 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 APH1BQ8WW43 257 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 PYDC1Q8WXC3 89 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 MUL1Q969V5 352 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 MRPL48Q96GC5 212 aaKnown RBP14.69□□□□□ -0.06
NUP88-203ENST00000572019 RETNQ9HD89 108 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 NUBP2Q9Y5Y2 271 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 PEX16Q9Y5Y5 336 aa14.69□□□□□ -0.06
NUP88-203ENST00000572019 FADS2O95864 444 aaKnown RBP14.68□□□□□ -0.06
NUP88-203ENST00000572019 IGLV1-51P01701 117 aa14.68□□□□□ -0.06
NUP88-203ENST00000572019 CD2P06729 351 aa14.68□□□□□ -0.06
NUP88-203ENST00000572019 PPP3R1P63098 170 aa14.68□□□□□ -0.06
NUP88-203ENST00000572019 FAM131AQ6UXB0 335 aa14.68□□□□□ -0.06
NUP88-203ENST00000572019 GLDNQ6ZMI3 551 aaPredicted RBP14.68□□□□□ -0.06
NUP88-203ENST00000572019 OR4C12Q96R67 309 aa14.68□□□□□ -0.06
NUP88-203ENST00000572019 S100A13Q99584 98 aa14.68□□□□□ -0.06
NUP88-203ENST00000572019 GHITMQ9H3K2 345 aa14.68□□□□□ -0.06
NUP88-203ENST00000572019 MBNL3Q9NUK0 354 aaKnown RBP14.68□□□□□ -0.06
NUP88-203ENST00000572019 ALMS1Q8TCU4 4167 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 A8MZ25 164 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 SC5DO75845 299 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 HSPB1P04792 205 aaKnown RBP14.67□□□□□ -0.06
NUP88-203ENST00000572019 ETV1P50549 477 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 MRPL28Q13084 256 aaKnown RBP14.67□□□□□ -0.06
NUP88-203ENST00000572019 RIPK1Q13546 671 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 SMN1Q16637 294 aaKnown RBP14.67□□□□□ -0.06
NUP88-203ENST00000572019 HAGHQ16775 308 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 TMEM30BQ3MIR4 351 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 GLIPR1L1Q6UWM5 242 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 RHOXF1Q8NHV9 184 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 MRPL30Q8TCC3 161 aaKnown RBP14.67□□□□□ -0.06
NUP88-203ENST00000572019 RSRP1Q9BUV0 290 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 PARP12Q9H0J9 701 aaKnown RBP14.67□□□□□ -0.06
NUP88-203ENST00000572019 IFI27L2Q9H2X8 130 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 PAK1IP1Q9NWT1 392 aaPredicted RBP14.67□□□□□ -0.06
NUP88-203ENST00000572019 MRPS28Q9Y2Q9 187 aaKnown RBP14.67□□□□□ -0.06
NUP88-203ENST00000572019 GMPPBQ9Y5P6 360 aa14.67□□□□□ -0.06
NUP88-203ENST00000572019 HSPA12AO43301 675 aa14.66□□□□□ -0.06
NUP88-203ENST00000572019 RAB40BQ12829 278 aa14.66□□□□□ -0.06
NUP88-203ENST00000572019 LYPD6Q86Y78 171 aa14.66□□□□□ -0.06
NUP88-203ENST00000572019 RHOVQ96L33 236 aa14.66□□□□□ -0.06
NUP88-203ENST00000572019 MRPS18AQ9NVS2 196 aaKnown RBP14.66□□□□□ -0.06
NUP88-203ENST00000572019 ADAM30Q9UKF2 790 aa14.66□□□□□ -0.06
NUP88-203ENST00000572019 TRBV5-5A0A0J9YX44 114 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 A0A1W2PPK0 400 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 SNTNA6NMZ2 147 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 H3BNX3 289 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 RRHO14718 337 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 ST8SIA5O15466 376 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 ZNF780AO75290 641 aaPredicted RBP14.65□□□□□ -0.06
NUP88-203ENST00000572019 MAS1P04201 325 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 ARSBP15848 533 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 ALDH3A2P51648 485 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 TPPP2P59282 170 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 RPS11P62280 158 aaKnown RBP eCLIP14.65□□□□□ -0.06
NUP88-203ENST00000572019 RPL39P5Q59GN2 51 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 ZNF660Q6AZW8 331 aaPredicted RBP14.65□□□□□ -0.06
NUP88-203ENST00000572019 RPL22L1Q6P5R6 122 aaKnown RBP14.65□□□□□ -0.06
NUP88-203ENST00000572019 CBR4Q8N4T8 237 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 ZFP41Q8N8Y5 198 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 ABHD5Q8WTS1 349 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 SELENOIQ9C0D9 397 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 CST11Q9H112 138 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 SPACA1Q9HBV2 294 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 JPT1Q9UK76 154 aa14.65□□□□□ -0.06
NUP88-203ENST00000572019 OGG1O15527 345 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 BAG2O95816 211 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 CT45A6P0DMU7 189 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 CT45A5P0DMU8 189 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 CT45A7P0DMV0 189 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 DEFA5Q01523 94 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 ACTBL2Q562R1 376 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 C6orf141Q5SZD1 244 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 CD200R1LQ6Q8B3 271 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 UNQ5815/PRO19632Q6UWF5 114 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 IL34Q6ZMJ4 242 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 PPP1R27Q86WC6 154 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 LFNGQ8NES3 379 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 MRPS24Q96EL2 167 aaKnown RBP14.64□□□□□ -0.07
NUP88-203ENST00000572019 RDH12Q96NR8 316 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 CLCC1Q96S66 551 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 SPATA25Q9BR10 227 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 THAP7Q9BT49 309 aaPredicted RBP14.64□□□□□ -0.07
NUP88-203ENST00000572019 CNOT2Q9NZN8 540 aaKnown RBP14.64□□□□□ -0.07
NUP88-203ENST00000572019 STUB1Q9UNE7 303 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 ORC6Q9Y5N6 252 aa14.64□□□□□ -0.07
NUP88-203ENST00000572019 YPEL1O60688 119 aa14.63□□□□□ -0.07
NUP88-203ENST00000572019 MGMTP16455 207 aa14.63□□□□□ -0.07
NUP88-203ENST00000572019 CCDC58Q4VC31 144 aa14.63□□□□□ -0.07
NUP88-203ENST00000572019 TRAT1Q6PIZ9 186 aa14.63□□□□□ -0.07
NUP88-203ENST00000572019 SGPP2Q8IWX5 399 aa14.63□□□□□ -0.07
NUP88-203ENST00000572019 JAGN1Q8N5M9 183 aa14.63□□□□□ -0.07
NUP88-203ENST00000572019 FAM46BQ96A09 425 aa14.63□□□□□ -0.07
NUP88-203ENST00000572019 FLYWCH2Q96CP2 140 aaKnown RBP14.63□□□□□ -0.07
NUP88-203ENST00000572019 SMIM19Q96E16 107 aa14.63□□□□□ -0.07
NUP88-203ENST00000572019 Q96M66 194 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms