RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ACTBP60709 375 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 LY6G6FQ5SQ64 297 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 C9orf66Q5T8R8 295 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 MYOZ3Q8TDC0 251 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 GALMQ96C23 342 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 NABP2Q9BQ15 211 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 ERGIC3Q9Y282 383 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 LRRC42Q9Y546 428 aa12.55□□□□□ -0.4
CLN3-229ENST00000567963 RGS11O94810 467 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 UBBP0CG47 229 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 VSIG8P0DPA2 414 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 CNTFRP26992 372 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 CHATP28329 748 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 FHL3Q13643 280 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 ACSM3Q53FZ2 586 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 NKAPLQ5M9Q1 402 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 ZNF833PQ6ZTB9 187 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 MS4A15Q8N5U1 240 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 OR11H1Q8NG94 326 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 NEDD4LQ96PU5 975 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 SULT4A1Q9BR01 284 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 FAAP24Q9BTP7 215 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 MRPL20Q9BYC9 149 aaKnown RBP12.54□□□□□ -0.4
CLN3-229ENST00000567963 SCOCQ9UIL1 159 aa12.54□□□□□ -0.4
CLN3-229ENST00000567963 NBEAL2Q6ZNJ1 2754 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 ATP6V1G2O95670 118 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 HLA-DRB1P01911 266 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 KIAA0141Q14154 515 aaPredicted RBP12.53□□□□□ -0.4
CLN3-229ENST00000567963 HMGN3Q15651 99 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 FAM27D1Q5T7N8 215 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 OGFRL1Q5TC84 451 aaPredicted RBP12.53□□□□□ -0.4
CLN3-229ENST00000567963 GLT8D1Q68CQ7 371 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 OR10K2Q6IF99 312 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 LRRTM1Q86UE6 522 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 UBE2E2Q96LR5 201 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 ZNF251Q9BRH9 671 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 ANKRD60Q9BZ19 345 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 KLK15Q9H2R5 256 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 OR51J1Q9H342 316 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 LSM4Q9Y4Z0 139 aaKnown RBP12.53□□□□□ -0.4
CLN3-229ENST00000567963 WSB1Q9Y6I7 421 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 SAA2-SAA4A0A096LPE2 208 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 IGHV7-81A0A0B4J1V7 117 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 SEC14L6B5MCN3 397 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 G3V318 75 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 ATP6V0E1O15342 81 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 NBR2O15453 112 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 IGLV1-40P01703 118 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 SAA2P0DJI9 122 aaPredicted RBP12.53□□□□□ -0.4
CLN3-229ENST00000567963 HTR2CP28335 458 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 OR3A3P47888 321 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 RPS27AP62979 156 aaKnown RBP12.53□□□□□ -0.4
CLN3-229ENST00000567963 C1orf100Q5SVJ3 147 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 RNLSQ5VYX0 342 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 LIN54Q6MZP7 749 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 TMEM65Q6PI78 240 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 C6orf201Q7Z4U5 140 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 ZNF491Q8N8L2 437 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 NPBQ8NG41 125 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 OR2AK2Q8NG84 335 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 WWC2-AS2Q96NR7 200 aa12.53□□□□□ -0.4
CLN3-229ENST00000567963 I3L521 148 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 CASQ2O14958 399 aaPredicted RBP12.52□□□□□ -0.41
CLN3-229ENST00000567963 CDK1P06493 297 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 CD37P11049 281 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 SRMP19623 302 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 C5orf64Q2M2E5 130 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 RBM48Q5RL73 367 aaKnown RBP12.52□□□□□ -0.41
CLN3-229ENST00000567963 KCNG3Q8TAE7 436 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 PHYHIPQ92561 330 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 PRR25Q96S07 402 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 TMED9Q9BVK6 235 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 MND1Q9BWT6 205 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 TM2D1Q9BX74 207 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 TMEM59Q9BXS4 323 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 ABRACLQ9P1F3 81 aa12.52□□□□□ -0.41
CLN3-229ENST00000567963 NKX1-2Q9UD57 310 aaPredicted RBP12.52□□□□□ -0.41
CLN3-229ENST00000567963 TENM3Q9P273 2699 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 NDUFA3O95167 84 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 NAPSAO96009 420 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 NHLRC4P0CG21 123 aaPredicted RBP12.51□□□□□ -0.41
CLN3-229ENST00000567963 ECI1P42126 302 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 RAB9AP51151 201 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 RUNX1Q01196 453 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 UNC119Q13432 240 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 ZNF260Q3ZCT1 412 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 IL1F10Q8WWZ1 152 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 NICN1Q9BSH3 213 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 IFI27L2Q9H2X8 130 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 GNB4Q9HAV0 340 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 PARP11Q9NR21 331 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 PIPOXQ9P0Z9 390 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 STEAP1Q9UHE8 339 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 VSIG4Q9Y279 399 aa12.51□□□□□ -0.41
CLN3-229ENST00000567963 TRAV41A0A0B4J266 112 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 PTGES3LE9PB15 166 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 SLC22A1O15245 554 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 QRFPP83859 136 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 SPHARQ15513 63 aa12.5□□□□□ -0.41
CLN3-229ENST00000567963 FAM71F2Q6NXP2 309 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms