RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RNF152Q8N8N0 203 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 RITA1Q96K30 269 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 NEDD4LQ96PU5 975 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 MGLLQ99685 303 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 HSPB9Q9BQS6 159 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 ZNF251Q9BRH9 671 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 ABHD14AQ9BUJ0 271 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 ZFP57Q9NU63 452 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 NECAP2Q9NVZ3 263 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 KCNIP1Q9NZI2 227 aa11.69□□□□□ -0.54
CLN3-213ENST00000565047 NCBP2LA6PVI3 153 aaKnown RBP11.68□□□□□ -0.54
CLN3-213ENST00000565047 LDLRAD4O15165 306 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 CD33P20138 364 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 THBS3P49746 956 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 TRAM1Q15629 374 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 SSX1Q16384 188 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 MRPL41Q8IXM3 137 aaKnown RBP11.68□□□□□ -0.54
CLN3-213ENST00000565047 GALMQ96C23 342 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 P2RX4Q99571 388 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 NABP2Q9BQ15 211 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 AGMATQ9BSE5 352 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 IFI27L2Q9H2X8 130 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 ZNF580Q9UK33 172 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 AK6Q9Y3D8 172 aaKnown RBP11.68□□□□□ -0.54
CLN3-213ENST00000565047 LRRC42Q9Y546 428 aa11.68□□□□□ -0.54
CLN3-213ENST00000565047 SHISA3A0PJX4 238 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 AP4M1O00189 453 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 IGF1P05019 195 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 HSMCR30P0CW71 290 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 PSMA1P25786 263 aaKnown RBP11.67□□□□□ -0.54
CLN3-213ENST00000565047 BLVRBP30043 206 aaPredicted RBP11.67□□□□□ -0.54
CLN3-213ENST00000565047 KRTAP10-11P60412 298 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 P2RY14Q15391 338 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 TBCEQ15813 527 aaPredicted RBP11.67□□□□□ -0.54
CLN3-213ENST00000565047 IZUMO2Q6UXV1 221 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 FOXRED2Q8IWF2 684 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 COMMD1Q8N668 190 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 RCC1LQ96I51 464 aaKnown RBP11.67□□□□□ -0.54
CLN3-213ENST00000565047 HDHD3Q9BSH5 251 aaPredicted RBP11.67□□□□□ -0.54
CLN3-213ENST00000565047 MRPL20Q9BYC9 149 aaKnown RBP11.67□□□□□ -0.54
CLN3-213ENST00000565047 PARP12Q9H0J9 701 aaKnown RBP11.67□□□□□ -0.54
CLN3-213ENST00000565047 AK3Q9UIJ7 227 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 HSF4Q9ULV5 492 aa11.67□□□□□ -0.54
CLN3-213ENST00000565047 SAA2-SAA4A0A096LPE2 208 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 SAA2P0DJI9 122 aaPredicted RBP11.66□□□□□ -0.54
CLN3-213ENST00000565047 ARSBP15848 533 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 SLC6A1P30531 599 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 OR3A3P47888 321 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 EGFEM1PQ0D2K5 195 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 PLA2G7Q13093 441 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 PNLIPRP3Q17RR3 467 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 PLAC9Q5JTB6 97 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 CD200R1LQ6Q8B3 271 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 C8orf86Q6ZUL3 223 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 OR51D1Q8NGF3 324 aa11.66□□□□□ -0.54
CLN3-213ENST00000565047 ITGB1BP1O14713 200 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 PROP1O75360 226 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 ARL6IP5O75915 188 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 IGHG4P01861 327 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 PF4P02776 101 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 RPLP1P05386 114 aaKnown RBP11.65□□□□□ -0.54
CLN3-213ENST00000565047 CNTFRP26992 372 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 CALRP27797 417 aaKnown RBP11.65□□□□□ -0.54
CLN3-213ENST00000565047 PPIFP30405 207 aaKnown RBP11.65□□□□□ -0.54
CLN3-213ENST00000565047 CLDN12P56749 244 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 SLC35B1P78383 322 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 C2orf76Q3KRA6 126 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 FAM71F2Q6NXP2 309 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 TEX38Q6PEX7 206 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 RASL11BQ9BPW5 248 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 CCDC90BQ9GZT6 254 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 RIMS4Q9H426 269 aaPredicted RBP11.65□□□□□ -0.54
CLN3-213ENST00000565047 ACOT13Q9NPJ3 140 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 PLEKHJ1Q9NW61 149 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 ZNF107Q9UII5 783 aaPredicted RBP11.65□□□□□ -0.54
CLN3-213ENST00000565047 KCNK7Q9Y2U2 307 aa11.65□□□□□ -0.54
CLN3-213ENST00000565047 RGS11O94810 467 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 DUS4LO95620 317 aaKnown RBP11.64□□□□□ -0.55
CLN3-213ENST00000565047 CT45A6P0DMU7 189 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 CT45A5P0DMU8 189 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 CT45A7P0DMV0 189 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 PSMB8P28062 276 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 SOX6P35712 828 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 MYCNOSP40205 109 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 HSPA13P48723 471 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 ACTBP60709 375 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 FOXE3Q13461 319 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 KIAA0141Q14154 515 aaPredicted RBP11.64□□□□□ -0.55
CLN3-213ENST00000565047 KHDC1LQ5JSQ8 128 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 LCNL1Q6ZST4 164 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 NPBQ8NG41 125 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 MYOZ3Q8TDC0 251 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 FAM3DQ96BQ1 224 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 RAX2Q96IS3 184 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 ARHGAP5-AS1Q96IT6 56 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 CNBD2Q96M20 576 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 PECRQ9BY49 303 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 VCX3BQ9H321 246 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 PLGRKTQ9HBL7 147 aa11.64□□□□□ -0.55
CLN3-213ENST00000565047 Q9N2K0 584 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 174.9 ms