RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 NAPSAO96009 420 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 SAA2P0DJI9 122 aaPredicted RBP13.89□□□□□ -0.19
HDDC3-205ENST00000559898 TPBGQ13641 420 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 ZNF880Q6PDB4 577 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 FOXRED2Q8IWF2 684 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 SVOPQ8N4V2 548 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 UFD1Q92890 307 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 RCC1LQ96I51 464 aaKnown RBP13.89□□□□□ -0.19
HDDC3-205ENST00000559898 NEDD4LQ96PU5 975 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 RASL11BQ9BPW5 248 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 IFI27L2Q9H2X8 130 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 SCN3BQ9NY72 215 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 KCNIP1Q9NZI2 227 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 GHRLQ9UBU3 117 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 AK3Q9UIJ7 227 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 JPT1Q9UK76 154 aa13.89□□□□□ -0.19
HDDC3-205ENST00000559898 SHISA3A0PJX4 238 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 FOXI3A8MTJ6 420 aaPredicted RBP13.88□□□□□ -0.19
HDDC3-205ENST00000559898 AP4M1O00189 453 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 UBBP0CG47 229 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 CRHBPP24387 322 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 BLVRBP30043 206 aaPredicted RBP13.88□□□□□ -0.19
HDDC3-205ENST00000559898 TMEM50BP56557 158 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 HTD2P86397 168 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 FABP5Q01469 135 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 RPL39P5Q59GN2 51 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 TRAT1Q6PIZ9 186 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 GLDNQ6ZMI3 551 aaPredicted RBP13.88□□□□□ -0.19
HDDC3-205ENST00000559898 SETD6Q8TBK2 473 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 IL1F10Q8WWZ1 152 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 ZNF251Q9BRH9 671 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 CCDC90BQ9GZT6 254 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 OR1A1Q9P1Q5 309 aa13.88□□□□□ -0.19
HDDC3-205ENST00000559898 ZNF107Q9UII5 783 aaPredicted RBP13.88□□□□□ -0.19
HDDC3-205ENST00000559898 G3V318 75 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 RGS10O43665 173 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 YPEL1O60688 119 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 LINC00205P59089 165 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 ACTBP60709 375 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 SLC35B1P78383 322 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 EGFEM1PQ0D2K5 195 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 PNLIPRP3Q17RR3 467 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 ZNF833PQ6ZTB9 187 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 ZNF695Q8IW36 515 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 KCNG3Q8TAE7 436 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 THRSPQ92748 146 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 YPEL2Q96QA6 119 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 ANKRD60Q9BZ19 345 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 WSB1Q9Y6I7 421 aa13.87□□□□□ -0.19
HDDC3-205ENST00000559898 BPNT1O95861 308 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 CPEP16870 476 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 NDPQ00604 133 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 KIAA0141Q14154 515 aaPredicted RBP13.86□□□□□ -0.19
HDDC3-205ENST00000559898 MMDQ15546 238 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 SSX1Q16384 188 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 TMEM30BQ3MIR4 351 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 TEX38Q6PEX7 206 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 OR51D1Q8NGF3 324 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 OR6M1Q8NGM8 313 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 GALMQ96C23 342 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 ABHD14BQ96IU4 210 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 KCTD7Q96MP8 289 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 KLK15Q9H2R5 256 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 CHMP1AQ9HD42 196 aaPredicted RBP13.86□□□□□ -0.19
HDDC3-205ENST00000559898 ZFP57Q9NU63 452 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 TPRKBQ9Y3C4 175 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 FBXO7Q9Y3I1 522 aa13.86□□□□□ -0.19
HDDC3-205ENST00000559898 SLC17A2O00624 439 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 TXNL1O43396 289 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 PROP1O75360 226 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 SOX6P35712 828 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 MYCNOSP40205 109 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 RAB25P57735 213 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 PLAC9Q5JTB6 97 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 STEAP3Q658P3 488 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 C11orf87Q6NUJ2 197 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 IZUMO2Q6UXV1 221 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 FAM89BQ8N5H3 189 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 PLGRKTQ9HBL7 147 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 PLEKHJ1Q9NW61 149 aa13.85□□□□□ -0.19
HDDC3-205ENST00000559898 IGHV7-81A0A0B4J1V7 117 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 IGKV1-6A0A0C4DH72 117 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 ERICH4A6NGS2 130 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 CCL24O00175 119 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 ATP6V0E1O15342 81 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 SCTP09683 121 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 CT45A6P0DMU7 189 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 CT45A5P0DMU8 189 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 CT45A7P0DMV0 189 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 ARSBP15848 533 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 CALRP27797 417 aaKnown RBP13.84□□□□□ -0.19
HDDC3-205ENST00000559898 VEGFCP49767 419 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 LUMP51884 338 aaPredicted RBP13.84□□□□□ -0.19
HDDC3-205ENST00000559898 OR10A3P58181 314 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 MLLT11Q13015 90 aaPredicted RBP13.84□□□□□ -0.19
HDDC3-205ENST00000559898 MOGAT2Q3SYC2 334 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 HES5Q5TA89 166 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 FAM131AQ6UXB0 335 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 ZNF554Q86TJ5 538 aa13.84□□□□□ -0.19
HDDC3-205ENST00000559898 RNF152Q8N8N0 203 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms