RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CYYR1Q96J86 154 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 NABP2Q9BQ15 211 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 CST11Q9H112 138 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 C8orf4Q9NR00 106 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 CNOT2Q9NZN8 540 aaKnown RBP8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 SCOCQ9UIL1 159 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 LRRC42Q9Y546 428 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 WSB1Q9Y6I7 421 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 G3V318 75 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 ATP6V0E1O15342 81 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 NBR2O15453 112 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 YPEL1O60688 119 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 HLA-DRB1P01911 266 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 CNTFRP26992 372 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 PPIFP30405 207 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 LY6G6FQ5SQ64 297 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 ZNF833PQ6ZTB9 187 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 AHSA2Q719I0 299 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 C8orf59Q8N0T1 100 aaPredicted RBP8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 ZNF491Q8N8L2 437 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 OR2AK2Q8NG84 335 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 MYOZ3Q8TDC0 251 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 GALMQ96C23 342 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 RITA1Q96K30 269 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 UBE2E2Q96LR5 201 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 NEDD4LQ96PU5 975 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 YPEL2Q96QA6 119 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 MRPL20Q9BYC9 149 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 ANKRD60Q9BZ19 345 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 KLK15Q9H2R5 256 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 OR51J1Q9H342 316 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 GNB4Q9HAV0 340 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 PARP11Q9NR21 331 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 ABRACLQ9P1F3 81 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 KIAA1456Q9P272 454 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 VSIG4Q9Y279 399 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 U3KQK5 164 aa8.63□□□□□ -1.03
CCDC88C-213ENST00000557455 SAA2-SAA4A0A096LPE2 208 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 IGHV7-81A0A0B4J1V7 117 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 TRAV41A0A0B4J266 112 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 I3L521 148 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 IGLV1-40P01703 118 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 OR8U8P0C7N1 319 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 UBBP0CG47 229 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 SAA2P0DJI9 122 aaPredicted RBP8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 OR3A3P47888 321 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 INSL3P51460 131 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 RUNX1Q01196 453 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 ZNF616Q08AN1 781 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 KIAA0141Q14154 515 aaPredicted RBP8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 C5orf64Q2M2E5 130 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 C6orf141Q5SZD1 244 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 LIN54Q6MZP7 749 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 NANOGP1Q8N7R0 232 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 BPIFB6Q8NFQ5 453 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 OR1N2Q8NGR9 330 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 OR5B12Q96R08 314 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 SULT4A1Q9BR01 284 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 FAAP24Q9BTP7 215 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 PLCXD1Q9NUJ7 323 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 STEAP1Q9UHE8 339 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 PSORS1C1Q9UIG5 152 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 ERGIC3Q9Y282 383 aa8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 ZNF256Q9Y2P7 627 aaPredicted RBP8.62□□□□□ -1.03
CCDC88C-213ENST00000557455 SORL1Q92673 2214 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 LY86O95711 162 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 GNAO1P09471 354 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 CHATP28329 748 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 BLVRBP30043 206 aaPredicted RBP8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 RAB9AP51151 201 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 INSL4Q14641 139 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 HMGN3Q15651 99 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 ACSM3Q53FZ2 586 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 RBM48Q5RL73 367 aaKnown RBP8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 GLT8D1Q68CQ7 371 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 OR10K2Q6IF99 312 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 LAIR2Q6ISS4 152 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 FAM71F2Q6NXP2 309 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 C6orf201Q7Z4U5 140 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 MS4A15Q8N5U1 240 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 NPBQ8NG41 125 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 IL1F10Q8WWZ1 152 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 TMEM59Q9BXS4 323 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 PIPOXQ9P0Z9 390 aa8.61□□□□□ -1.03
CCDC88C-213ENST00000557455 RAB29O14966 203 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 ST8SIA5O15466 376 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 NDUFA3O95167 84 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 GNB1P62873 340 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 RPS27AP62979 156 aaKnown RBP8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 PLGLAQ15195 96 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 ECSCRQ19T08 205 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 ASPHD1Q5U4P2 390 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 FAM131AQ6UXB0 335 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 MINDY2Q8NBR6 621 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 KCNG3Q8TAE7 436 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 SETD6Q8TBK2 473 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 ASCL2Q99929 193 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 TMED9Q9BVK6 235 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 MND1Q9BWT6 205 aa8.6□□□□□ -1.03
CCDC88C-213ENST00000557455 IFI27L2Q9H2X8 130 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms