RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 FCGR1BQ92637 280 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 FAM3DQ96BQ1 224 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 R3HDM4Q96D70 268 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 ABCG5Q9H222 651 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 GHITMQ9H3K2 345 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 PLSCR3Q9NRY6 295 aa12.7□□□□□ -0.38
CCDC88C-209ENST00000554872 PDCD5O14737 125 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 SOCS1O15524 211 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 PLXNB1O43157 2135 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 SLC6A1P30531 599 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 PPP1CCP36873 323 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 P2RY14Q15391 338 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 BEAN1Q3B7T3 259 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 HIST2H2BDQ6DRA6 164 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 ZNF833PQ6ZTB9 187 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 FAM71E2Q8N5Q1 922 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 Q8N9W7 124 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 WFDC9Q8NEX5 89 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 OR52L2PQ8NGH6 319 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 OR56B1Q8NGI3 324 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 C12orf4Q9NQ89 552 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 STEAP1Q9UHE8 339 aa12.69□□□□□ -0.38
CCDC88C-209ENST00000554872 IGHV3-72A0A0B4J1Y9 119 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 PSMB11A5LHX3 300 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 SH2D7A6NKC9 451 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 FGF9P31371 208 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 TMEM50BP56557 158 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 HNF4GQ14541 408 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 SLC35E3Q7Z769 313 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 FOXRED2Q8IWF2 684 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 LYG1Q8N1E2 194 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 OR2AK2Q8NG84 335 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 OR51D1Q8NGF3 324 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 IFI27L2Q9H2X8 130 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 AK3Q9UIJ7 227 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 RAB22AQ9UL26 194 aa12.68□□□□□ -0.38
CCDC88C-209ENST00000554872 TCRBV4S1A1TA0A5B7 111 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 IFITM5A6NNB3 132 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 AP4M1O00189 453 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 DIRAS3O95661 229 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 RAB6AP20340 208 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 MYL9P24844 172 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 GPR12P47775 334 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 HLA-DRB3P79483 266 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 C2orf76Q3KRA6 126 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 C9orf152Q5JTZ5 239 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 SPARTQ8N0X7 666 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 STPG2Q8N412 459 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 PTX4Q96A99 478 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 S1PR3Q99500 378 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 NABP2Q9BQ15 211 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 GON7Q9BXV9 100 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 PIPOXQ9P0Z9 390 aa12.67□□□□□ -0.38
CCDC88C-209ENST00000554872 TMEM272A0A1B0GTI8 110 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 SHISA3A0PJX4 238 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 SERPINE3A8MV23 424 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 ZNF736B4DX44 427 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 G3V4G9 280 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 SLC35B1P78383 322 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 C10orf99Q6UWK7 81 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 RNF152Q8N8N0 203 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 ARHGAP5-AS1Q96IT6 56 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 ZNF251Q9BRH9 671 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 PECRQ9BY49 303 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 CHMP1AQ9HD42 196 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 Q9N2K0 584 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 ZFP57Q9NU63 452 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 SLC23A1Q9UHI7 598 aa12.66□□□□□ -0.38
CCDC88C-209ENST00000554872 PRKDCP78527 4128 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 SAA2-SAA4A0A096LPE2 208 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 NCBP2LA6PVI3 153 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 RAB29O14966 203 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 IGF1P05019 195 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 SAA2P0DJI9 122 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 RAB3BP20337 219 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 VEGFCP49767 419 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 CLDN12P56749 244 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 PLAC9Q5JTB6 97 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 REC114Q7Z4M0 266 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 EDARADDQ8WWZ3 215 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 CHCHD6Q9BRQ6 235 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 AGMATQ9BSE5 352 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 MRPL20Q9BYC9 149 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 TOLLIPQ9H0E2 274 aa12.65□□□□□ -0.38
CCDC88C-209ENST00000554872 NOTCH3Q9UM47 2321 aa12.65□□□□□ -0.39
CCDC88C-209ENST00000554872 TGP01266 2768 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 PF4V1P10720 104 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 ZBTB25P24278 435 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 OR10A3P58181 314 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 RPL23AP62750 156 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 CFHR3Q02985 330 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 HES5Q5TA89 166 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 ZNF773Q6PK81 442 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 C5orf24Q7Z6I8 188 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 IL1F10Q8WWZ1 152 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 NOL4LQ96MY1 436 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 RASL11BQ9BPW5 248 aa12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 CMSS1Q9BQ75 279 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 HDHD3Q9BSH5 251 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-209ENST00000554872 KCNK7Q9Y2U2 307 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms