RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 PPP3R1P63098 170 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 MEDAGQ5VYS4 303 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 ZNF660Q6AZW8 331 aaPredicted RBP6.94□□□□□ -1.3
SYNE2-209ENST00000553308 XAF1Q6GPH4 301 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 RAB12Q6IQ22 244 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 UNQ5815/PRO19632Q6UWF5 114 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 FAM131AQ6UXB0 335 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 ZNF833PQ6ZTB9 187 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 GAPTQ8N292 157 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 TCTEX1D1Q8N7M0 179 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 RHOVQ96L33 236 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 S100A13Q99584 98 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 TMED9Q9BVK6 235 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 TAF9BQ9HBM6 251 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 RAB9BQ9NP90 201 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 TMEM138Q9NPI0 162 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 PAK1IP1Q9NWT1 392 aaPredicted RBP6.94□□□□□ -1.3
SYNE2-209ENST00000553308 ERGIC3Q9Y282 383 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 NUBP2Q9Y5Y2 271 aa6.94□□□□□ -1.3
SYNE2-209ENST00000553308 RRHO14718 337 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 ZNF780AO75290 641 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-209ENST00000553308 CD2P06729 351 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 FCGR1AP12314 374 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 SNRPBP14678 240 aaKnown RBP6.93□□□□□ -1.3
SYNE2-209ENST00000553308 BDKRB2P30411 391 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 GBX2P52951 348 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-209ENST00000553308 RAB40BQ12829 278 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 MRPL28Q13084 256 aaKnown RBP6.93□□□□□ -1.3
SYNE2-209ENST00000553308 PLGLAQ15195 96 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 ACTBL2Q562R1 376 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 PYHIN1Q6K0P9 492 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 TRAT1Q6PIZ9 186 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 CD200R1LQ6Q8B3 271 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 PPP1R27Q86WC6 154 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 GPR148Q8TDV2 347 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 RDH12Q96NR8 316 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 ZNF184Q99676 751 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-209ENST00000553308 THAP7Q9BT49 309 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-209ENST00000553308 TUBA4BQ9H853 241 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 SPACA1Q9HBV2 294 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 AMBNQ9NP70 447 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 MBNL3Q9NUK0 354 aaKnown RBP6.93□□□□□ -1.3
SYNE2-209ENST00000553308 CNOT2Q9NZN8 540 aaKnown RBP6.93□□□□□ -1.3
SYNE2-209ENST00000553308 JPT1Q9UK76 154 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 PEX16Q9Y5Y5 336 aa6.93□□□□□ -1.3
SYNE2-209ENST00000553308 UBE2QL1A1L167 161 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 SNTNA6NMZ2 147 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 ARPC1BO15143 372 aaKnown RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 ST8SIA5O15466 376 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 YPEL1O60688 119 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 SC5DO75845 299 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 RGS11O94810 467 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 FADS2O95864 444 aaKnown RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 TRGV3P03979 118 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 MAS1P04201 325 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 GABRB1P18505 474 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 TMEM267Q0VDI3 215 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 RIPK1Q13546 671 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 ZIK1Q3SY52 487 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 GLDNQ6ZMI3 551 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 IL34Q6ZMJ4 242 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 LFNGQ8NES3 379 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 OR52I1Q8NGK6 324 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 OR13C5Q8NGS8 318 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 MRPL30Q8TCC3 161 aaKnown RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 MUL1Q969V5 352 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 MRPS24Q96EL2 167 aaKnown RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 CENPNQ96H22 339 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 YPEL2Q96QA6 119 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 CLCC1Q96S66 551 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 MYCBPQ99417 103 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-209ENST00000553308 HIPK2Q9H2X6 1198 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 IFI27L2Q9H2X8 130 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 BANF2Q9H503 90 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 ADAM30Q9UKF2 790 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 RNF150Q9ULK6 438 aa6.92□□□□□ -1.3
SYNE2-209ENST00000553308 TRAV8-7A0A075B6U6 113 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 ANKRD34BA5PLL1 514 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 IZUMO1RA6ND01 250 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 H0Y980 276 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 EI24O14681 340 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 CA2P00918 260 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 ALPLP05186 524 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 TFAP2AP05549 437 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 LIMS3P0CW19 117 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 LIMS4P0CW20 117 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 CT45A6P0DMU7 189 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 CT45A5P0DMU8 189 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 CT45A7P0DMV0 189 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 IGFBP3P17936 291 aaPredicted RBP6.91□□□□□ -1.3
SYNE2-209ENST00000553308 ZP3P21754 424 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 SYNJ2BPP57105 145 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 DEFA5Q01523 94 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 KLF5Q13887 457 aaPredicted RBP6.91□□□□□ -1.3
SYNE2-209ENST00000553308 GPR176Q14439 515 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 AKIRIN2Q53H80 203 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 RPL39P5Q59GN2 51 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 SIGIRRQ6IA17 410 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 GLIPR1L1Q6UWM5 242 aa6.91□□□□□ -1.3
SYNE2-209ENST00000553308 GTSCR1Q86UQ5 136 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms