RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 C22orf42Q6IC83 251 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 GALMQ96C23 342 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 ABHD14AQ9BUJ0 271 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 PECRQ9BY49 303 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 TXNL4BQ9NX01 149 aaKnown RBP11.26□□□□□ -0.61
USP28-209ENST00000540925 IGHV3-72A0A0B4J1Y9 119 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 ZNF736B4DX44 427 aaPredicted RBP11.25□□□□□ -0.61
USP28-209ENST00000540925 CSF1P09603 554 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 RAB3BP20337 219 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 MYL9P24844 172 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 MOGAT2Q3SYC2 334 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 ZNF833PQ6ZTB9 187 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 MOB3BQ86TA1 216 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 TGIF2LXQ8IUE1 241 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 OR56B1Q8NGI3 324 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 PTX4Q96A99 478 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 CITED2Q99967 270 aaPredicted RBP11.25□□□□□ -0.61
USP28-209ENST00000540925 IFI27L2Q9H2X8 130 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 Q9N2K0 584 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 C12orf4Q9NQ89 552 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 STUB1Q9UNE7 303 aa11.25□□□□□ -0.61
USP28-209ENST00000540925 A0A0B4J203 849 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 RAB27BO00194 218 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 ITGB1BP1O14713 200 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 RAB6AP20340 208 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 LSAMPQ13449 338 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 HES1Q14469 280 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 HNF4GQ14541 408 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 NDUFA11Q86Y39 141 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 LYG1Q8N1E2 194 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 OR5AU1Q8NGC0 362 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 OR2T10Q8NGZ9 312 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 FAM110DQ8TAY7 271 aaPredicted RBP11.24□□□□□ -0.61
USP28-209ENST00000540925 ZNF251Q9BRH9 671 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 AGMATQ9BSE5 352 aa11.24□□□□□ -0.61
USP28-209ENST00000540925 PARP12Q9H0J9 701 aaKnown RBP11.24□□□□□ -0.61
USP28-209ENST00000540925 IGKV1-6A0A0C4DH72 117 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 MFNGO00587 321 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 RGS11O94810 467 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 MOSP00540 346 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 IGHG2P01859 326 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 OPN1MWP04001 364 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 OPN1MW2P0DN77 364 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 OPN1MW3P0DN78 364 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 HLA-DRB3P79483 266 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 FAM71F2Q6NXP2 309 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 C10orf99Q6UWK7 81 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 TPRA1Q86W33 373 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 FAM71E2Q8N5Q1 922 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 Q8N9W7 124 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 RBMXL1Q96E39 390 aaKnown RBP11.23□□□□□ -0.61
USP28-209ENST00000540925 NABP2Q9BQ15 211 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 OR51E2Q9H255 320 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 CHMP1AQ9HD42 196 aaPredicted RBP11.23□□□□□ -0.61
USP28-209ENST00000540925 ABRACLQ9P1F3 81 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 MGAT4AQ9UM21 535 aa11.23□□□□□ -0.61
USP28-209ENST00000540925 SAA2-SAA4A0A096LPE2 208 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 NOTOA8MTQ0 251 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 SAA2P0DJI9 122 aaPredicted RBP11.22□□□□□ -0.61
USP28-209ENST00000540925 SLC2A2P11168 524 aaPredicted RBP11.22□□□□□ -0.61
USP28-209ENST00000540925 OR3A3P47888 321 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 ARSJQ5FYB0 599 aaPredicted RBP11.22□□□□□ -0.61
USP28-209ENST00000540925 OR2AK2Q8NG84 335 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 OR8H1Q8NGG4 311 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 OR10R2Q8NGX6 335 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 CMSS1Q9BQ75 279 aaKnown RBP11.22□□□□□ -0.61
USP28-209ENST00000540925 MRPL20Q9BYC9 149 aaKnown RBP11.22□□□□□ -0.61
USP28-209ENST00000540925 TOLLIPQ9H0E2 274 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 ABCG5Q9H222 651 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 LIN7CQ9NUP9 197 aaKnown RBP11.22□□□□□ -0.61
USP28-209ENST00000540925 SLC23A1Q9UHI7 598 aa11.22□□□□□ -0.61
USP28-209ENST00000540925 LINC01548A6NM66 108 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 PEX14O75381 377 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 SCTP09683 121 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 HIST1H1DP16402 221 aaKnown RBP11.21□□□□□ -0.61
USP28-209ENST00000540925 F2RL1P55085 397 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 CENPVQ7Z7K6 275 aaPredicted RBP11.21□□□□□ -0.61
USP28-209ENST00000540925 IL1F10Q8WWZ1 152 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 RAB3CQ96E17 227 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 S1PR3Q99500 378 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.21□□□□□ -0.61
USP28-209ENST00000540925 OR1A1Q9P1Q5 309 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 SSR3Q9UNL2 185 aa11.21□□□□□ -0.61
USP28-209ENST00000540925 SMIM30A4D0T7 59 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 TRIM64CA6NLI5 447 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 TRDCB7Z8K6 153 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 ST8SIA5O15466 376 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 PROP1O75360 226 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 FCGR3AP08637 254 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 GNB3P16520 340 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 GADD45AP24522 165 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 SDC2P34741 201 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 NEDD8Q15843 81 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 NSUN5P1Q3KNT7 163 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 C9orf152Q5JTZ5 239 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 SFXN4Q6P4A7 337 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 SETD6Q8TBK2 473 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 RITA1Q96K30 269 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 NOL4LQ96MY1 436 aaPredicted RBP11.2□□□□□ -0.62
USP28-209ENST00000540925 CABLES2Q9BTV7 478 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms