RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 KIR2DL5BQ8NHK3 375 aa4.74□□□□□ -1.65
CD44-237ENST00000534082 STON2Q8WXE9 905 aa4.74□□□□□ -1.65
CD44-237ENST00000534082 MRPL20Q9BYC9 149 aaKnown RBP4.74□□□□□ -1.65
CD44-237ENST00000534082 SPAG4Q9NPE6 437 aa4.74□□□□□ -1.65
CD44-237ENST00000534082 FAM118AQ9NWS6 357 aa4.74□□□□□ -1.65
CD44-237ENST00000534082 GID8Q9NWU2 228 aa4.74□□□□□ -1.65
CD44-237ENST00000534082 TECRQ9NZ01 308 aaKnown RBP4.74□□□□□ -1.65
CD44-237ENST00000534082 OR52A1Q9UKL2 312 aa4.74□□□□□ -1.65
CD44-237ENST00000534082 R4GMQ9 66 aa4.74□□□□□ -1.65
CD44-237ENST00000534082 V9GYQ6 96 aa4.74□□□□□ -1.65
CD44-237ENST00000534082 TRAV24A0A0B4J272 114 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 C2orf70A6NJV1 201 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 C15orf65H3BRN8 121 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 FCN1O00602 326 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 NME4O00746 187 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 RRHO14718 337 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 PRODHO43272 600 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 SYT7O43581 403 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 B3GALNT1O75752 331 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 SERPINA3P01011 423 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 MRPL3P09001 348 aaKnown RBP4.73□□□□□ -1.65
CD44-237ENST00000534082 RPS7P62081 194 aaKnown RBP4.73□□□□□ -1.65
CD44-237ENST00000534082 RPS16P62249 146 aaKnown RBP4.73□□□□□ -1.65
CD44-237ENST00000534082 PAX5Q02548 391 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 ODF4Q2M2E3 257 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 ANKRD55Q3KP44 614 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 CT45A1Q5HYN5 189 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 PVRIGQ6DKI7 326 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 ARPINQ7Z6K5 226 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 IQCF1Q8N6M8 205 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 CT45A3Q8NHU0 189 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 CACNG8Q8WXS5 425 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 SNAPC3Q92966 411 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 ARL11Q969Q4 196 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 YIPF3Q9GZM5 350 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 PARP12Q9H0J9 701 aaKnown RBP4.73□□□□□ -1.65
CD44-237ENST00000534082 RHOFQ9HBH0 211 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 NEK6Q9HC98 313 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 SAMD4AQ9UPU9 718 aaKnown RBP4.73□□□□□ -1.65
CD44-237ENST00000534082 AP3M1Q9Y2T2 418 aa4.73□□□□□ -1.65
CD44-237ENST00000534082 IGKV1-9A0A0C4DH69 117 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 BMPR1BO00238 502 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 DEFB4AO15263 64 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 SCAF4O95104 1147 aaKnown RBP4.72□□□□□ -1.65
CD44-237ENST00000534082 CA2P00918 260 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 GASTP01350 101 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 AMBPP02760 352 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 SEMG1P04279 462 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 GZMHP20718 246 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 PRKACBP22694 351 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 KCNJ3P48549 501 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 ZNF134P52741 427 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 MRPL28Q13084 256 aaKnown RBP4.72□□□□□ -1.65
CD44-237ENST00000534082 Q3ZCU0 254 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 SPATS1Q496A3 300 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 C1orf134Q5TEV5 83 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 ZNF57Q68EA5 555 aaPredicted RBP4.72□□□□□ -1.65
CD44-237ENST00000534082 CFAP161Q6P656 301 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 KCTD20Q7Z5Y7 419 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 NR2C2APQ86WQ0 139 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 AQP11Q8NBQ7 271 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 BBS1Q8NFJ9 593 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 OR5T1Q8NG75 326 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 OR10V1Q8NGI7 309 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 GRPEL2Q8TAA5 225 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 CNIH3Q8TBE1 160 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 SUN5Q8TC36 379 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 ASB17Q8WXJ9 295 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 PP6455Q8WZ26 134 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 OPALINQ96PE5 141 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 CLCC1Q96S66 551 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 RARRES2Q99969 163 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 GNG12Q9UBI6 72 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 SNX5Q9Y5X3 404 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 TMEM14AQ9Y6G1 99 aa4.72□□□□□ -1.65
CD44-237ENST00000534082 TRAV10A0A0B4J240 114 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 LOC107986453A0A1B0GWG9 222 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 TMEM30CPA0ZSE6 113 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 LGALS9O00182 355 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 MAGEB4O15481 346 aaPredicted RBP4.71□□□□□ -1.66
CD44-237ENST00000534082 FABP3P05413 133 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 OCM2P0CE71 109 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 OCMP0CE72 109 aaPredicted RBP4.71□□□□□ -1.66
CD44-237ENST00000534082 RPL35AP18077 110 aaKnown RBP4.71□□□□□ -1.66
CD44-237ENST00000534082 ATF1P18846 271 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 MAGEA2P43356 314 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 KRTAP10-2P60368 255 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 MAGOHP61326 146 aaKnown RBP4.71□□□□□ -1.66
CD44-237ENST00000534082 MAPRE2Q15555 327 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 SLC35D3Q5M8T2 416 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 FAM131AQ6UXB0 335 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 CD300LDQ6UXZ3 194 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 ZNF562Q6V9R5 426 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 Q6ZRM9 215 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 Q6ZTC4 211 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 SAXO1Q8IYX7 474 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 SLC7A5P1Q8MH63 180 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 OR1L6Q8NGR2 347 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 TEX47Q8TBZ9 253 aa4.71□□□□□ -1.66
CD44-237ENST00000534082 THRSPQ92748 146 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms