RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	PECR	Q9BY49	303 aa		18.28	■□□□□ 0.52
CAPN1-222	ENST00000532285	TXNL4B	Q9NX01	149 aa	Known RBP	18.28	■□□□□ 0.52
CAPN1-222	ENST00000532285	IGHV3-72	A0A0B4J1Y9	119 aa		18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285	LANCL1	O43813	399 aa		18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285	HIST2H2BD	Q6DRA6	164 aa		18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285		Q6ZPA2	131 aa		18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285	C5orf56	Q8N8D9	126 aa		18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285	FAM110D	Q8TAY7	271 aa	Predicted RBP	18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285	EAF1	Q96JC9	268 aa	Predicted RBP	18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285	C12orf4	Q9NQ89	552 aa		18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285	SSR3	Q9UNL2	185 aa		18.27	■□□□□ 0.52
CAPN1-222	ENST00000532285	SH2D7	A6NKC9	451 aa	Predicted RBP	18.26	■□□□□ 0.51
CAPN1-222	ENST00000532285	RAB6A	P20340	208 aa		18.26	■□□□□ 0.51
CAPN1-222	ENST00000532285	PLA2G7	Q13093	441 aa		18.26	■□□□□ 0.51
CAPN1-222	ENST00000532285	OR5AU1	Q8NGC0	362 aa		18.26	■□□□□ 0.51
CAPN1-222	ENST00000532285	CMSS1	Q9BQ75	279 aa	Known RBP	18.26	■□□□□ 0.51
CAPN1-222	ENST00000532285	HDHD3	Q9BSH5	251 aa	Predicted RBP	18.26	■□□□□ 0.51
CAPN1-222	ENST00000532285	MEGF8	Q7Z7M0	2845 aa		18.25	■□□□□ 0.51
CAPN1-222	ENST00000532285	MOS	P00540	346 aa		18.25	■□□□□ 0.51
CAPN1-222	ENST00000532285	PLAC9	Q5JTB6	97 aa		18.25	■□□□□ 0.51
CAPN1-222	ENST00000532285	TPRA1	Q86W33	373 aa		18.25	■□□□□ 0.51
CAPN1-222	ENST00000532285	NR2C2AP	Q86WQ0	139 aa		18.25	■□□□□ 0.51
CAPN1-222	ENST00000532285	NDUFA11	Q86Y39	141 aa		18.25	■□□□□ 0.51
CAPN1-222	ENST00000532285		Q8N6K4	173 aa		18.25	■□□□□ 0.51
CAPN1-222	ENST00000532285	OR2AK2	Q8NG84	335 aa		18.25	■□□□□ 0.51
CAPN1-222	ENST00000532285	GADD45A	P24522	165 aa		18.24	■□□□□ 0.51
CAPN1-222	ENST00000532285	NSUN5P1	Q3KNT7	163 aa		18.24	■□□□□ 0.51
CAPN1-222	ENST00000532285	ODF3L1	Q8IXM7	274 aa		18.24	■□□□□ 0.51
CAPN1-222	ENST00000532285	PTX4	Q96A99	478 aa		18.24	■□□□□ 0.51
CAPN1-222	ENST00000532285	RAB3C	Q96E17	227 aa		18.24	■□□□□ 0.51
CAPN1-222	ENST00000532285	CITED2	Q99967	270 aa	Predicted RBP	18.24	■□□□□ 0.51
CAPN1-222	ENST00000532285		Q9N2K0	584 aa		18.24	■□□□□ 0.51
CAPN1-222	ENST00000532285	METTL21EP	A6NDL7	271 aa		18.23	■□□□□ 0.51
CAPN1-222	ENST00000532285	NCBP2L	A6PVI3	153 aa	Known RBP	18.23	■□□□□ 0.51
CAPN1-222	ENST00000532285	NOTO	A8MTQ0	251 aa		18.23	■□□□□ 0.51
CAPN1-222	ENST00000532285	HLA-DRB3	P79483	266 aa		18.23	■□□□□ 0.51
CAPN1-222	ENST00000532285	MRPS15	P82914	257 aa	Known RBP	18.23	■□□□□ 0.51
CAPN1-222	ENST00000532285	NEDD8	Q15843	81 aa		18.23	■□□□□ 0.51
CAPN1-222	ENST00000532285	OR10R2	Q8NGX6	335 aa		18.23	■□□□□ 0.51
CAPN1-222	ENST00000532285	OR51E2	Q9H255	320 aa		18.23	■□□□□ 0.51
CAPN1-222	ENST00000532285		A0A0B4J203	849 aa		18.22	■□□□□ 0.51
CAPN1-222	ENST00000532285	ZNF736	B4DX44	427 aa	Predicted RBP	18.22	■□□□□ 0.51
CAPN1-222	ENST00000532285	CD3G	P09693	182 aa		18.22	■□□□□ 0.51
CAPN1-222	ENST00000532285	MOGAT2	Q3SYC2	334 aa		18.22	■□□□□ 0.51
CAPN1-222	ENST00000532285	OR8H1	Q8NGG4	311 aa		18.22	■□□□□ 0.51
CAPN1-222	ENST00000532285	KCTD7	Q96MP8	289 aa		18.22	■□□□□ 0.51
CAPN1-222	ENST00000532285	KCNK7	Q9Y2U2	307 aa		18.22	■□□□□ 0.51
CAPN1-222	ENST00000532285	SMIM30	A4D0T7	59 aa		18.21	■□□□□ 0.51
CAPN1-222	ENST00000532285	SLC2A2	P11168	524 aa	Predicted RBP	18.21	■□□□□ 0.51
CAPN1-222	ENST00000532285	ZBTB25	P24278	435 aa		18.21	■□□□□ 0.51
CAPN1-222	ENST00000532285	CD83	Q01151	205 aa		18.21	■□□□□ 0.51
CAPN1-222	ENST00000532285	LSAMP	Q13449	338 aa		18.21	■□□□□ 0.51
CAPN1-222	ENST00000532285	ZNF833P	Q6ZTB9	187 aa		18.21	■□□□□ 0.51
CAPN1-222	ENST00000532285	PIPOX	Q9P0Z9	390 aa		18.21	■□□□□ 0.51
CAPN1-222	ENST00000532285	SLC23A1	Q9UHI7	598 aa		18.21	■□□□□ 0.51
CAPN1-222	ENST00000532285	SAA2-SAA4	A0A096LPE2	208 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	ADARB2-AS1	A8MUL3	147 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	RAB27B	O00194	218 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	ITGB1BP1	O14713	200 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	HSPA12A	O43301	675 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	IGHG2	P01859	326 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	SCT	P09683	121 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	SAA2	P0DJI9	122 aa	Predicted RBP	18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	CD36	P16671	472 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	CEACAM6	P40199	344 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	OR3A3	P47888	321 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	FAM71F2	Q6NXP2	309 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285		Q8N9W7	124 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	OR4X2	Q8NGF9	303 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	S1PR3	Q99500	378 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	CHCHD6	Q9BRQ6	235 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	IFI27L2	Q9H2X8	130 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	GHITM	Q9H3K2	345 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	PLSCR3	Q9NRY6	295 aa		18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	LIN7C	Q9NUP9	197 aa	Known RBP	18.2	■□□□□ 0.5
CAPN1-222	ENST00000532285	TRDC	B7Z8K6	153 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	RAB29	O14966	203 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	ST8SIA5	O15466	376 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	OPN1MW	P04001	364 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	OPN1MW2	P0DN77	364 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	OPN1MW3	P0DN78	364 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	GNB3	P16520	340 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	SDC2	P34741	201 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	SLC35E3	Q7Z769	313 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	OR4F17	Q8NGA8	305 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	CHPT1	Q8WUD6	406 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	EDARADD	Q8WWZ3	215 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	OR4F4	Q96R69	305 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	NABP2	Q9BQ15	211 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	MRPL20	Q9BYC9	149 aa	Known RBP	18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	ATG5	Q9H1Y0	275 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	ABCG5	Q9H222	651 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	DAPK2	Q9UIK4	370 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	PLXNB1	O43157	2135 aa		18.19	■□□□□ 0.5
CAPN1-222	ENST00000532285	LOC100506127	A0A0U1RQW1	187 aa		18.18	■□□□□ 0.5
CAPN1-222	ENST00000532285	TCRBV4S1A1T	A0A5B7	111 aa		18.18	■□□□□ 0.5
CAPN1-222	ENST00000532285	PSMB11	A5LHX3	300 aa		18.18	■□□□□ 0.5
CAPN1-222	ENST00000532285	SERPINE3	A8MV23	424 aa		18.18	■□□□□ 0.5
CAPN1-222	ENST00000532285	MFNG	O00587	321 aa		18.18	■□□□□ 0.5
CAPN1-222	ENST00000532285	TNFAIP8	O95379	198 aa		18.18	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 37 ms