RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 OR4P4Q8NGL7 312 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 ZNF107Q9UII5 783 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-215ENST00000496447 ZNF729A6NN14 1252 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-215ENST00000496447 H3BQ15 152 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 FAM106CPP0CH98 169 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 BSXQ3C1V8 233 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 COX19Q49B96 90 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 ZNF660Q6AZW8 331 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-215ENST00000496447 PERPQ96FX8 193 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 GGACTQ9BVM4 153 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 COL4A1P02462 1669 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 A0A1W2PR77 199 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 GAPDHP04406 335 aaKnown RBP11.4□□□□□ -0.58
PTPRF-215ENST00000496447 PGA4P0DJD7 388 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 CRISP2P16562 243 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 ERVS71-1P61550 626 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 STARD4Q96DR4 205 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 PGLYRP3Q96LB9 341 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 OR51B2Q9Y5P1 312 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 DOCK5Q9H7D0 1870 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 IGHV3-21A0A0B4J1V1 117 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 ZNHIT1O43257 154 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 MBPP02686 304 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-215ENST00000496447 C5orf17Q8NAS9 161 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 OR1K1Q8NGR3 316 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 SFXN3Q9BWM7 321 aa11.4□□□□□ -0.58
PTPRF-215ENST00000496447 A0A0U1RQV5 110 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 J3QR06 171 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 DLL1O00548 723 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 FCN1O00602 326 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 ELOBQ15370 118 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 ZNF124Q15973 351 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 DPPA3Q6W0C5 159 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 LRP11Q86VZ4 500 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 FAM222BQ8WU58 562 aa11.4□□□□□ -0.59
PTPRF-215ENST00000496447 MARS2Q96GW9 593 aaKnown RBP11.4□□□□□ -0.59
PTPRF-215ENST00000496447 IFNL4K9M1U5 179 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 PSG2P11465 335 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 NPY1RP25929 384 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 KLHDC2Q9Y2U9 406 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 LINC00587B1AMM8 73 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 ORM1P02763 201 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 GPA33Q99795 319 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 KIAA1324LA8MWY0 1029 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-215ENST00000496447 PCOLCEQ15113 449 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 ANKRD55Q3KP44 614 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 MRGPRGQ86SM5 289 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 PARD6GQ9BYG4 376 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-215ENST00000496447 DLEC1Q9Y238 1755 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 APC2O95996 2303 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 WISP3O95389 354 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-215ENST00000496447 LYRM7Q5U5X0 104 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 MANBALQ9NQG1 85 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 ANKRD31Q8N7Z5 1873 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 FOCADQ5VW36 1801 aa11.39□□□□□ -0.59
PTPRF-215ENST00000496447 CFDP00746 253 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-215ENST00000496447 F12P00748 615 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-215ENST00000496447 HIST1H1EP10412 219 aaKnown RBP11.38□□□□□ -0.59
PTPRF-215ENST00000496447 CAMPP49913 170 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 MRPL24Q96A35 216 aaKnown RBP11.38□□□□□ -0.59
PTPRF-215ENST00000496447 TBX15Q96SF7 602 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 TPRP12270 2363 aaKnown RBP11.38□□□□□ -0.59
PTPRF-215ENST00000496447 GFRA1P56159 465 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 GCSAMQ8N6F7 178 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 PRSS27Q9BQR3 290 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 HDHD3Q9BSH5 251 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-215ENST00000496447 NPIPB9F8W1W9 429 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 HLA-DQB1P01920 261 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 MUC1P15941 1255 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-215ENST00000496447 ALX4Q9H161 411 aaPredicted RBP11.38□□□□□ -0.59
PTPRF-215ENST00000496447 DNAJC13O75165 2243 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 A6NDN8 102 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 VWA1Q6PCB0 445 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 CCL19Q99731 98 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 NKX2-6A6NCS4 301 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 PF4V1P10720 104 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 KIR3DL2P43630 455 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 FBLIM1Q8WUP2 373 aa11.38□□□□□ -0.59
PTPRF-215ENST00000496447 A0A1B0GU03 582 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 STAG3L2P0CL84 134 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 PAM16Q9Y3D7 125 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 IGHV3-72A0A0B4J1Y9 119 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 CXorf65A6NEN9 183 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 GZMMP51124 257 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 NHLH1Q02575 133 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 NDUFA2O43678 99 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 SEC11BP0C7V7 166 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 FAM3BP58499 235 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-215ENST00000496447 ZNF826PQ6ZT77 177 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 TMEM191AQ9H0A3 160 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 HPRT1P00492 218 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 HBZP02008 142 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 OR5AL1P0C617 328 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 MPV17P39210 176 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 FDCSPQ8NFU4 85 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 FUT9Q9Y231 359 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 LOC102724200A0A096LPH7 203 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-215ENST00000496447 ZNF883P0CG24 379 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 CEACAM1P13688 526 aa11.37□□□□□ -0.59
PTPRF-215ENST00000496447 FGF12P61328 243 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms