RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DUSP21Q9H596 190 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM231Q9H6L2 316 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ALG9Q9H6U8 611 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 WDR54Q9H977 334 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ACTR8Q9H981 624 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 AKIRIN1Q9H9L7 192 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PLEKHA1Q9HB21 404 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 IL1RL2Q9HB29 575 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PDFQ9HBH1 243 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ADGRL4Q9HBW9 690 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 HRASLSQ9HDD0 168 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 RAB18Q9NP72 206 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MEPEQ9NQ76 525 aaPredicted RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF226Q9NYT6 803 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PRO0461Q9UI25 63 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 VPREB3Q9UKI3 123 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 NXT1Q9UKK6 140 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MMP17Q9ULZ9 603 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 NPIPA1Q9UND3 350 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 FOXJ3Q9UPW0 622 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 RASD1Q9Y272 281 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 FARSAQ9Y285 508 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 UFC1Q9Y3C8 167 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ATG4BQ9Y4P1 393 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ORC6Q9Y5N6 252 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CDH10Q9Y6N8 788 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 TNRC6BQ9UPQ9 1833 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 DCHS2Q6V1P9 2916 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 CROCCQ5TZA2 2017 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 HYDINQ4G0P3 5121 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 COL4A2P08572 1712 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 HELZP42694 1942 aaKnown RBP1.6□□□□□ -2.15
HMGB1-208ENST00000490788 MYLKQ15746 1914 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PI4KAP42356 2102 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 ESPL1Q14674 2120 aa1.6□□□□□ -2.15
HMGB1-208ENST00000490788 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.59□□□□□ -2.152e-6■■□□□ 14.1
HMGB1-208ENST00000490788 TRAV30A0A087WSZ9 112 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 FXYD6-FXYD2A0A087WZ82 144 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.59□□□□□ -2.15
HMGB1-208ENST00000490788 TRAV39A0A0B4J263 110 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 IGHV1OR15-9A0A0B4J2B8 117 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 KIR2DL5BA0A0G2JN68 375 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 KIR2DL5BA0A0G2JPC4 375 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 A0A1B0GUS0 222 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 LOC100130705A0A1B0GUX0 176 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM129A0AVI4 362 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 C7orf77A4D0Y5 90 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 PRORSD1PA6NEY8 169 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM235A6NFC5 223 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 FAM183AA6NL82 134 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 G3V4G9 280 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 H0Y980 276 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 H0Y9J4 135 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 CORTO00230 105 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 MAGEB4O15481 346 aaPredicted RBP1.59□□□□□ -2.15
HMGB1-208ENST00000490788 PDE6DO43924 150 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 SNAPC5O75971 98 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 CDRT1O95170 752 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 KLF8O95600 359 aaPredicted RBP1.59□□□□□ -2.15
HMGB1-208ENST00000490788 CDS2O95674 445 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 NDUFB10O96000 172 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 GCGP01275 180 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 HLA-DQB1P01920 261 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 SERPINA7P05543 415 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 HOXB7P09629 217 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 SFTA3P0C7M3 94 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35G6P0C7Q6 338 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 UBBP0CG47 229 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 PET100P0DJ07 73 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 CT45A8P0DMV1 189 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 CT45A9P0DMV2 189 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 ESDP10768 282 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 AREGP15514 252 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 KITLGP21583 273 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 GDF1P27539 372 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 SSTR5P35346 364 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 CFHR2P36980 270 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 RFX3P48380 749 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 NUMBP49757 651 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 GEMP55040 296 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 FOXA1P55317 472 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 CTBP2P56545 445 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 OR4D2P58180 307 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 OR12D2P58182 307 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 SEC61GP60059 68 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 RAB8AP61006 207 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 UBA52P62987 128 aaKnown RBP1.59□□□□□ -2.15
HMGB1-208ENST00000490788 PAFAH1B2P68402 229 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 HBA1P69905 142 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 NDPQ00604 133 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 SP4Q02446 784 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 BAXQ07812 192 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 MFGE8Q08431 387 aaPredicted RBP1.59□□□□□ -2.15
HMGB1-208ENST00000490788 TPBGQ13641 420 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 EBPQ15125 230 aaKnown RBP1.59□□□□□ -2.15
HMGB1-208ENST00000490788 MRPL23Q16540 153 aaKnown RBP1.59□□□□□ -2.15
HMGB1-208ENST00000490788 LTC4SQ16873 150 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 ZSWIM7Q19AV6 140 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 DEFB109BQ30KR1 87 aa1.59□□□□□ -2.15
HMGB1-208ENST00000490788 CEACAM21Q3KPI0 293 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms