RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 MS4A10Q96PG2 267 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 FAM103A1Q9BTL3 118 aaKnown RBP11.69□□□□□ -0.54
MCF2L-228ENST00000487354 RSRP1Q9BUV0 290 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 IFI27L2Q9H2X8 130 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 OR2S2Q9NQN1 319 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 MBNL3Q9NUK0 354 aaKnown RBP11.69□□□□□ -0.54
MCF2L-228ENST00000487354 ERVK13-1Q9NX77 482 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 ETAA1Q9NY74 926 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 TRAPPC2LQ9UL33 140 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 ATP8B1O43520 1251 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 CSTBP04080 98 aaKnown RBP11.68□□□□□ -0.54
MCF2L-228ENST00000487354 TPPP2P59282 170 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 SLC22A6Q4U2R8 563 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 SIGIRRQ6IA17 410 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 FAM131AQ6UXB0 335 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 ANKRD13BQ86YJ7 626 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 TMEM106AQ96A25 262 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 ELOVL1Q9BW60 279 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 TAF9BQ9HBM6 251 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 TMEM138Q9NPI0 162 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 IMPAD1Q9NX62 359 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 CNOT2Q9NZN8 540 aaKnown RBP11.68□□□□□ -0.54
MCF2L-228ENST00000487354 ADAM30Q9UKF2 790 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 GMPPBQ9Y5P6 360 aa11.68□□□□□ -0.54
MCF2L-228ENST00000487354 IZUMO1RA6ND01 250 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 RRHO14718 337 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 RGS11O94810 467 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 IFNA6P05013 189 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 RPSAP08865 295 aaKnown RBP11.67□□□□□ -0.54
MCF2L-228ENST00000487354 GTF2F2P13984 249 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 IGFBP3P17936 291 aaPredicted RBP11.67□□□□□ -0.54
MCF2L-228ENST00000487354 ACTBL2Q562R1 376 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 MEDAGQ5VYS4 303 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 RAB12Q6IQ22 244 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 PYHIN1Q6K0P9 492 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 STX19Q8N4C7 294 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 MRPL30Q8TCC3 161 aaKnown RBP11.67□□□□□ -0.54
MCF2L-228ENST00000487354 LINC00476Q8WZB0 136 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 JPT1Q9UK76 154 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 AP4S1Q9Y587 144 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 HECTD4Q9Y4D8 3996 aa11.67□□□□□ -0.54
MCF2L-228ENST00000487354 SAC3D1A6NKF1 404 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 ARPC1BO15143 372 aaKnown RBP11.66□□□□□ -0.54
MCF2L-228ENST00000487354 SSBP2P81877 361 aaPredicted RBP11.66□□□□□ -0.54
MCF2L-228ENST00000487354 MRPL28Q13084 256 aaKnown RBP11.66□□□□□ -0.54
MCF2L-228ENST00000487354 KLF5Q13887 457 aaPredicted RBP11.66□□□□□ -0.54
MCF2L-228ENST00000487354 AKIRIN2Q53H80 203 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 LY6G6FQ5SQ64 297 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 C6orf141Q5SZD1 244 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 TRAT1Q6PIZ9 186 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 UNQ5815/PRO19632Q6UWF5 114 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 PPP1R27Q86WC6 154 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 LFNGQ8NES3 379 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 OR13C5Q8NGS8 318 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 GPR148Q8TDV2 347 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 ZNF184Q99676 751 aaPredicted RBP11.66□□□□□ -0.54
MCF2L-228ENST00000487354 SPACA1Q9HBV2 294 aa11.66□□□□□ -0.54
MCF2L-228ENST00000487354 KIAA1109Q2LD37 5005 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 MCRIP1C9JLW8 97 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 YPEL1O60688 119 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 ZNF780AO75290 641 aaPredicted RBP11.65□□□□□ -0.54
MCF2L-228ENST00000487354 ALPLP05186 524 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 CSN3P07498 182 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 LIMS3P0CW19 117 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 LIMS4P0CW20 117 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 CT45A6P0DMU7 189 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 CT45A5P0DMU8 189 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 CT45A7P0DMV0 189 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 BDKRB2P30411 391 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 MECP2P51608 486 aaKnown RBP11.65□□□□□ -0.54
MCF2L-228ENST00000487354 HTD2P86397 168 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 GLDNQ6ZMI3 551 aaPredicted RBP11.65□□□□□ -0.54
MCF2L-228ENST00000487354 OR9G4Q8NGQ1 327 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 RDH12Q96NR8 316 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 YPEL2Q96QA6 119 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 TMED9Q9BVK6 235 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 SLA2Q9H6Q3 261 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 AMBNQ9NP70 447 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 RAB9BQ9NP90 201 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 PAK1IP1Q9NWT1 392 aaPredicted RBP11.65□□□□□ -0.54
MCF2L-228ENST00000487354 ERGIC3Q9Y282 383 aa11.65□□□□□ -0.54
MCF2L-228ENST00000487354 TRAV8-7A0A075B6U6 113 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 H0YJW9 148 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 FADS2O95864 444 aaKnown RBP11.64□□□□□ -0.55
MCF2L-228ENST00000487354 ALDH3A2P51648 485 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 GBX2P52951 348 aaPredicted RBP11.64□□□□□ -0.55
MCF2L-228ENST00000487354 RPL39P5Q59GN2 51 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 DMKNQ6E0U4 476 aaPredicted RBP11.64□□□□□ -0.55
MCF2L-228ENST00000487354 FAM71F2Q6NXP2 309 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 ZNF554Q86TJ5 538 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 OR52I1Q8NGK6 324 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 IL17DQ8TAD2 202 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 ABHD5Q8WTS1 349 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 MRPL48Q96GC5 212 aaKnown RBP11.64□□□□□ -0.55
MCF2L-228ENST00000487354 CENPNQ96H22 339 aaPredicted RBP11.64□□□□□ -0.55
MCF2L-228ENST00000487354 PARP12Q9H0J9 701 aaKnown RBP11.64□□□□□ -0.55
MCF2L-228ENST00000487354 PEX16Q9Y5Y5 336 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 CEPT1Q9Y6K0 416 aa11.64□□□□□ -0.55
MCF2L-228ENST00000487354 TRBV5-5A0A0J9YX44 114 aa11.63□□□□□ -0.55
MCF2L-228ENST00000487354 UBE2QL1A1L167 161 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms