RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 DUX4L5P0CJ88 424 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 DUX4L6P0CJ89 424 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 DUX4L7P0CJ90 424 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 GLIPR1P48060 266 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 EDDM3BP56851 147 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 ARF6P62330 175 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 EDDM3AQ14507 147 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 DEFB112Q30KQ8 113 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 PLA1AQ53H76 456 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 FAAP20Q6NZ36 180 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 DUX4L9Q6RFH8 374 aaPredicted RBP13.92□□□□□ -0.18
VIM-205ENST00000485947 PLET1Q6UQ28 207 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 CABLES2Q9BTV7 478 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 RAB9BQ9NP90 201 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 ING3Q9NXR8 418 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 DUX4Q9UBX2 424 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 NUBP2Q9Y5Y2 271 aa13.92□□□□□ -0.18
VIM-205ENST00000485947 IGHV3OR16-10A0A075B7F0 116 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 TCRBP04435 133 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 GSTT2P0CG29 244 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 SELLP14151 372 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 RCC1P18754 421 aaPredicted RBP13.91□□□□□ -0.18
VIM-205ENST00000485947 GZMHP20718 246 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 GLP1RP43220 463 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 TSPAN5P62079 268 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 MEF2CQ06413 473 aaPredicted RBP13.91□□□□□ -0.18
VIM-205ENST00000485947 RBMS2Q15434 407 aaKnown RBP13.91□□□□□ -0.18
VIM-205ENST00000485947 CCBE1Q6UXH8 406 aaPredicted RBP13.91□□□□□ -0.18
VIM-205ENST00000485947 BRD3OSQ6XYD6 125 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 OR51S1Q8NGJ8 323 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 CCDC107Q8WV48 283 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 SSMEM1Q8WWF3 244 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 SLC25A21Q9BQT8 299 aaPredicted RBP13.91□□□□□ -0.18
VIM-205ENST00000485947 ZNF747Q9BV97 191 aa13.91□□□□□ -0.18
VIM-205ENST00000485947 A0A1W2PPH5 198 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 NDUFB6O95139 128 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 SCTP09683 121 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 OR5H8P0DN80 308 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 NDUFB7P17568 137 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 ECI1P42126 302 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 NCR3LG1Q68D85 454 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 SHISA2Q6UWI4 295 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 TPRX1Q8N7U7 411 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 ZNF565Q8N9K5 539 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 OR13A1Q8NGR1 328 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 CORO2AQ92828 525 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 CREB3L1Q96BA8 519 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 METTL8Q9H825 291 aaKnown RBP13.9□□□□□ -0.18
VIM-205ENST00000485947 TAF9BQ9HBM6 251 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 MMP24Q9Y5R2 645 aa13.9□□□□□ -0.18
VIM-205ENST00000485947 TRGV10A0A0A0MS01 117 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 hADV38S2A0JD32 116 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 NPIPB11E5RHQ5 1161 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 HOXA3O43365 443 aaPredicted RBP13.89□□□□□ -0.19
VIM-205ENST00000485947 SPNP16150 400 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 CCR6P51684 374 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 RAG2P55895 527 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 SCGB2B2Q4G0G5 96 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 DHRS11Q6UWP2 260 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 Q6ZNX1 250 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 IDO2Q6ZQW0 420 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 VMO1Q7Z5L0 202 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 LDLRAD3Q86YD5 345 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 OR6F1Q8NGZ6 308 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 MRGPRDQ8TDS7 321 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 LHX4Q969G2 390 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 ONECUT1Q9UBC0 465 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 LINC00312Q9Y6C7 94 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 MGAM2Q2M2H8 2515 aa13.89□□□□□ -0.19
VIM-205ENST00000485947 TGP01266 2768 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 ZNF729A6NN14 1252 aaPredicted RBP13.88□□□□□ -0.19
VIM-205ENST00000485947 C12orf77C9JDV5 145 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 SDCBPO00560 298 aaPredicted RBP13.88□□□□□ -0.19
VIM-205ENST00000485947 SPINT2O43291 252 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 CRYBA1P05813 215 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 HERPUD1Q15011 391 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 TMEM30BQ3MIR4 351 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 LHFPL1Q86WI0 220 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 TERB2Q8NHR7 220 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 GIMAP1Q8WWP7 306 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 H1FXQ92522 213 aaKnown RBP13.88□□□□□ -0.19
VIM-205ENST00000485947 GALMQ96C23 342 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 GINS4Q9BRT9 223 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 MARVELD1Q9BSK0 173 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 TAS2R3Q9NYW6 316 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 UBE2J1Q9Y385 318 aaPredicted RBP13.88□□□□□ -0.19
VIM-205ENST00000485947 KIAA2026Q5HYC2 2103 aa13.88□□□□□ -0.19
VIM-205ENST00000485947 TRBV6-7A0A0A0MS04 114 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 TRAV39A0A0B4J263 110 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 KCNAB3O43448 404 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 HBZP02008 142 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 UBE2E1P51965 193 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 RPL31P62899 125 aaKnown RBP13.87□□□□□ -0.19
VIM-205ENST00000485947 HTD2P86397 168 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 SURF2Q15527 256 aaPredicted RBP13.87□□□□□ -0.19
VIM-205ENST00000485947 IGSF11Q5DX21 431 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 ZNF660Q6AZW8 331 aaPredicted RBP13.87□□□□□ -0.19
VIM-205ENST00000485947 OR13C8Q8NGS7 320 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 OR10J5Q8NHC4 309 aa13.87□□□□□ -0.19
VIM-205ENST00000485947 ARL11Q969Q4 196 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms