RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 NOL4LQ96MY1 436 aaPredicted RBP16.79■□□□□ 0.28
HMGB3-205ENST00000455596 RIMS4Q9H426 269 aaPredicted RBP16.79■□□□□ 0.28
HMGB3-205ENST00000455596 V9GY05 133 aa16.79■□□□□ 0.28
HMGB3-205ENST00000455596 GABARAPL2P60520 117 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 SSX1Q16384 188 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 KPRPQ5T749 579 aaPredicted RBP16.78■□□□□ 0.28
HMGB3-205ENST00000455596 ZNF880Q6PDB4 577 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 MOB1BQ7L9L4 216 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 ZNF329Q86UD4 541 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 OR8H1Q8NGG4 311 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 IL1F10Q8WWZ1 152 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 ABCG5Q9H222 651 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 STEAP1Q9UHE8 339 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 LINC00527Q9UJ94 153 aa16.78■□□□□ 0.28
HMGB3-205ENST00000455596 NOTCH1P46531 2555 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 PF4P02776 101 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 CD33P20138 364 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 CLDN12P56749 244 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 SLC35B1P78383 322 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 LSAMPQ13449 338 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 ODF3L1Q8IXM7 274 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 STPG2Q8N412 459 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 OR2AK2Q8NG84 335 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 FAM3DQ96BQ1 224 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 S1PR3Q99500 378 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 RASL11BQ9BPW5 248 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 PLSCR3Q9NRY6 295 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 AK3Q9UIJ7 227 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 HSF4Q9ULV5 492 aa16.77■□□□□ 0.28
HMGB3-205ENST00000455596 TRBV6-6A0A0A6YYG2 114 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 PDCD5O14737 125 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 MRPS14O60783 128 aaKnown RBP16.76■□□□□ 0.27
HMGB3-205ENST00000455596 GPR12P47775 334 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 VEGFCP49767 419 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 C2orf76Q3KRA6 126 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 OXLD1Q5BKU9 147 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 HES5Q5TA89 166 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 Q6ZPA2 131 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 Q9H521 79 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 NDUFB11Q9NX14 153 aa16.76■□□□□ 0.27
HMGB3-205ENST00000455596 LINC01548A6NM66 108 aa16.75■□□□□ 0.27
HMGB3-205ENST00000455596 FOXI3A8MTJ6 420 aaPredicted RBP16.75■□□□□ 0.27
HMGB3-205ENST00000455596 AP4M1O00189 453 aa16.75■□□□□ 0.27
HMGB3-205ENST00000455596 MYL9P24844 172 aa16.75■□□□□ 0.27
HMGB3-205ENST00000455596 COMMD1Q8N668 190 aa16.75■□□□□ 0.27
HMGB3-205ENST00000455596 OR56B1Q8NGI3 324 aa16.75■□□□□ 0.27
HMGB3-205ENST00000455596 MGAT4AQ9UM21 535 aa16.75■□□□□ 0.27
HMGB3-205ENST00000455596 SAA2-SAA4A0A096LPE2 208 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 TRAV1-2A0A0B4J238 106 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 DENRO43583 198 aaKnown RBP16.74■□□□□ 0.27
HMGB3-205ENST00000455596 SAA2P0DJI9 122 aaPredicted RBP16.74■□□□□ 0.27
HMGB3-205ENST00000455596 F2RL1P55085 397 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 TMEM50BP56557 158 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 CD200R1LQ6Q8B3 271 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 ZNF833PQ6ZTB9 187 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 FAM71E2Q8N5Q1 922 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 WFDC9Q8NEX5 89 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 ARHGAP5-AS1Q96IT6 56 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 NABP2Q9BQ15 211 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 HDHD3Q9BSH5 251 aaPredicted RBP16.74■□□□□ 0.27
HMGB3-205ENST00000455596 GON7Q9BXV9 100 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 PECRQ9BY49 303 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 MRPL20Q9BYC9 149 aaKnown RBP16.74■□□□□ 0.27
HMGB3-205ENST00000455596 PIPOXQ9P0Z9 390 aa16.74■□□□□ 0.27
HMGB3-205ENST00000455596 TMEM272A0A1B0GTI8 110 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 TRDV1A0A1B0GX56 115 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 LDLRAD4O15165 306 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 GALP22466 123 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 RPL23AP62750 156 aaKnown RBP16.73■□□□□ 0.27
HMGB3-205ENST00000455596 HLA-DRB3P79483 266 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 FAM71F2Q6NXP2 309 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 RBMXL1Q96E39 390 aaKnown RBP16.73■□□□□ 0.27
HMGB3-205ENST00000455596 CMSS1Q9BQ75 279 aaKnown RBP16.73■□□□□ 0.27
HMGB3-205ENST00000455596 IFI27L2Q9H2X8 130 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 C12orf4Q9NQ89 552 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 ZFP57Q9NU63 452 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 RAB22AQ9UL26 194 aa16.73■□□□□ 0.27
HMGB3-205ENST00000455596 ST8SIA5O15466 376 aa16.72■□□□□ 0.27
HMGB3-205ENST00000455596 RRP9O43818 475 aaKnown RBP16.72■□□□□ 0.27
HMGB3-205ENST00000455596 SOX6P35712 828 aa16.72■□□□□ 0.27
HMGB3-205ENST00000455596 OR3A3P47888 321 aa16.72■□□□□ 0.27
HMGB3-205ENST00000455596 MMDQ15546 238 aa16.72■□□□□ 0.27
HMGB3-205ENST00000455596 Q9N2K0 584 aa16.72■□□□□ 0.27
HMGB3-205ENST00000455596 SLC23A1Q9UHI7 598 aa16.72■□□□□ 0.27
HMGB3-205ENST00000455596 SHISA3A0PJX4 238 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 RAB29O14966 203 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 IGLL1P15814 213 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 RAB3BP20337 219 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 ZBTB25P24278 435 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 OR10A3P58181 314 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 PNLIPRP3Q17RR3 467 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 UBE2UQ5VVX9 321 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 TEX38Q6PEX7 206 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 REC114Q7Z4M0 266 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 PHF21AQ96BD5 680 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 HSPB9Q9BQS6 159 aa16.71■□□□□ 0.27
HMGB3-205ENST00000455596 YTHDF1Q9BYJ9 559 aaKnown RBP16.71■□□□□ 0.27
HMGB3-205ENST00000455596 IFITM5A6NNB3 132 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 NUDT19A8MXV4 375 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 ITGB1BP1O14713 200 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms