RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 GABPB1Q06547 395 aaPredicted RBP11.3□□□□□ -0.6
SDC1-204ENST00000429035 ST3GAL4Q11206 333 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 DOC2BQ14184 412 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 PLGLAQ15195 96 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 TTC23Q5W5X9 447 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 AHSA2Q719I0 299 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 OR2AK2Q8NG84 335 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 GGHQ92820 318 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 NEDD4LQ96PU5 975 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 NABP2Q9BQ15 211 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 ANKRD60Q9BZ19 345 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 CST11Q9H112 138 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 ALX4Q9H161 411 aaPredicted RBP11.3□□□□□ -0.6
SDC1-204ENST00000429035 SCOCQ9UIL1 159 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 IGHV7-81A0A0B4J1V7 117 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 A0A1W2PN81 502 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 ST8SIA5O15466 376 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 SAP30O75446 220 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 HLA-DRB1P01911 266 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 MAPK3P27361 379 aaPredicted RBP11.29□□□□□ -0.6
SDC1-204ENST00000429035 CHRNA7P36544 502 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 C5orf64Q2M2E5 130 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 ASPHD1Q5U4P2 390 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 SIGIRRQ6IA17 410 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 FAM131AQ6UXB0 335 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 GAPTQ8N292 157 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 ZNF491Q8N8L2 437 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 CASTOR1Q8WTX7 329 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 GALMQ96C23 342 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 RITA1Q96K30 269 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 UBE2E2Q96LR5 201 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 MBNL3Q9NUK0 354 aaKnown RBP11.29□□□□□ -0.6
SDC1-204ENST00000429035 ABRACLQ9P1F3 81 aa11.29□□□□□ -0.6
SDC1-204ENST00000429035 RYR3Q15413 4870 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 EFCAB10A6NFE3 127 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 OVOL1O14753 267 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 SC5DO75845 299 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 PPIFP30405 207 aaKnown RBP11.28□□□□□ -0.6
SDC1-204ENST00000429035 SLURP1P55000 103 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 WNT4P56705 351 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 NDPQ00604 133 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 RBM48Q5RL73 367 aaKnown RBP11.28□□□□□ -0.6
SDC1-204ENST00000429035 FAM27D1Q5T7N8 215 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 STEAP3Q658P3 488 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 OR10K2Q6IF99 312 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 ODF3L1Q8IXM7 274 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 DHRSXQ8N5I4 330 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 MYOZ3Q8TDC0 251 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 DCUN1D4Q92564 292 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 SULT4A1Q9BR01 284 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 KCNK15Q9H427 330 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 STEAP1Q9UHE8 339 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 ZNF580Q9UK33 172 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 SMAD5-AS1Q9Y6J3 95 aa11.28□□□□□ -0.6
SDC1-204ENST00000429035 I3L521 148 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 YPEL1O60688 119 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 GLAP06280 429 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 RAB9AP51151 201 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 HTD2P86397 168 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 HMGN3Q15651 99 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 LIN54Q6MZP7 749 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 GLDNQ6ZMI3 551 aaPredicted RBP11.27□□□□□ -0.61
SDC1-204ENST00000429035 ZNF833PQ6ZTB9 187 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 C6orf201Q7Z4U5 140 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 CDH26Q8IXH8 852 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 ZNF485Q8NCK3 441 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 THRSPQ92748 146 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 YPEL2Q96QA6 119 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 CHCHD6Q9BRQ6 235 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 UQCC2Q9BRT2 126 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 TMEM59Q9BXS4 323 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 IFI27L2Q9H2X8 130 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 FBXL15Q9H469 300 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 ERGIC3Q9Y282 383 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 FBXO7Q9Y3I1 522 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 TENM3Q9P273 2699 aa11.27□□□□□ -0.61
SDC1-204ENST00000429035 H7C2Y5 167 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 GSTP1P09211 210 aaKnown RBP11.26□□□□□ -0.61
SDC1-204ENST00000429035 CHATP28329 748 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 INSL3P51460 131 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 INSL4Q14641 139 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 RPL39P5Q59GN2 51 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 C6orf141Q5SZD1 244 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 GLT8D1Q68CQ7 371 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 OVCH2Q7RTZ1 564 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 ZNF554Q86TJ5 538 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 C8orf59Q8N0T1 100 aaPredicted RBP11.26□□□□□ -0.61
SDC1-204ENST00000429035 BPIFB6Q8NFQ5 453 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 CLCC1Q96S66 551 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 FAAP24Q9BTP7 215 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 TMED9Q9BVK6 235 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 CNOT2Q9NZN8 540 aaKnown RBP11.26□□□□□ -0.61
SDC1-204ENST00000429035 GHRLQ9UBU3 117 aa11.26□□□□□ -0.61
SDC1-204ENST00000429035 FOXA2Q9Y261 457 aaPredicted RBP11.26□□□□□ -0.61
SDC1-204ENST00000429035 IGHV4OR15-8A0A075B7B6 117 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 A0A087WW49 117 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 LINC01619G3V211 115 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 EBAG9O00559 213 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 NDUFA3O95167 84 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 IGLV1-40P01703 118 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms