RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 MBNL3Q9NUK0 354 aaKnown RBP22.62■■□□□ 1.21
HMGB1-205ENST00000399494 GFOD1Q9NXC2 390 aa22.62■■□□□ 1.21
HMGB1-205ENST00000399494 GNG12Q9UBI6 72 aa22.62■■□□□ 1.21
HMGB1-205ENST00000399494 TRIM64CA6NLI5 447 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 LY6LH3BQJ8 138 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 EGFEM1PQ0D2K5 195 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 TMEM30BQ3MIR4 351 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 SFXN4Q6P4A7 337 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 ZNF554Q86TJ5 538 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 OR10X1Q8NGY0 326 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 OR1L1Q8NH94 360 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 YIPF6Q96EC8 236 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 ARHGAP5-AS1Q96IT6 56 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 PECRQ9BY49 303 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP22.61■■□□□ 1.21
HMGB1-205ENST00000399494 AK3Q9UIJ7 227 aa22.61■■□□□ 1.21
HMGB1-205ENST00000399494 METTL21EPA6NDL7 271 aa22.6■■□□□ 1.21
HMGB1-205ENST00000399494 TPTE2P1Q5T6R2 138 aa22.6■■□□□ 1.21
HMGB1-205ENST00000399494 TOMM40LQ969M1 308 aa22.6■■□□□ 1.21
HMGB1-205ENST00000399494 RPEQ96AT9 228 aa22.6■■□□□ 1.21
HMGB1-205ENST00000399494 RIMS4Q9H426 269 aaPredicted RBP22.6■■□□□ 1.21
HMGB1-205ENST00000399494 A0A1W2PPE3 182 aa22.59■■□□□ 1.21
HMGB1-205ENST00000399494 FOXI3A8MTJ6 420 aaPredicted RBP22.59■■□□□ 1.21
HMGB1-205ENST00000399494 CLEC2LP0C7M8 214 aa22.59■■□□□ 1.21
HMGB1-205ENST00000399494 MRPS15P82914 257 aaKnown RBP22.59■■□□□ 1.21
HMGB1-205ENST00000399494 MOB1BQ7L9L4 216 aa22.59■■□□□ 1.21
HMGB1-205ENST00000399494 LINC00482Q8N8I6 264 aa22.59■■□□□ 1.21
HMGB1-205ENST00000399494 PTX4Q96A99 478 aa22.59■■□□□ 1.21
HMGB1-205ENST00000399494 RAB3CQ96E17 227 aa22.59■■□□□ 1.21
HMGB1-205ENST00000399494 ABRACLQ9P1F3 81 aa22.59■■□□□ 1.21
HMGB1-205ENST00000399494 NAPSAO96009 420 aa22.58■■□□□ 1.21
HMGB1-205ENST00000399494 MNDAP41218 407 aa22.58■■□□□ 1.21
HMGB1-205ENST00000399494 TMEM50BP56557 158 aa22.58■■□□□ 1.21
HMGB1-205ENST00000399494 MADCAM1Q13477 382 aa22.58■■□□□ 1.21
HMGB1-205ENST00000399494 CCDC144NLQ6NUI1 221 aa22.58■■□□□ 1.21
HMGB1-205ENST00000399494 OR10V1Q8NGI7 309 aa22.58■■□□□ 1.21
HMGB1-205ENST00000399494 ATG5Q9H1Y0 275 aa22.58■■□□□ 1.21
HMGB1-205ENST00000399494 OR2S2Q9NQN1 319 aa22.58■■□□□ 1.21
HMGB1-205ENST00000399494 OOSP1A8MZH6 123 aa22.57■■□□□ 1.2
HMGB1-205ENST00000399494 HOXD3P31249 432 aaPredicted RBP22.57■■□□□ 1.2
HMGB1-205ENST00000399494 LSM3P62310 102 aaKnown RBP22.57■■□□□ 1.2
HMGB1-205ENST00000399494 KHDC1LQ5JSQ8 128 aa22.57■■□□□ 1.2
HMGB1-205ENST00000399494 PLAC9Q5JTB6 97 aa22.57■■□□□ 1.2
HMGB1-205ENST00000399494 C9orf152Q5JTZ5 239 aa22.57■■□□□ 1.2
HMGB1-205ENST00000399494 OR10R2Q8NGX6 335 aa22.57■■□□□ 1.2
HMGB1-205ENST00000399494 GALMQ96C23 342 aa22.57■■□□□ 1.2
HMGB1-205ENST00000399494 CMSS1Q9BQ75 279 aaKnown RBP22.57■■□□□ 1.2
HMGB1-205ENST00000399494 HDHD3Q9BSH5 251 aaPredicted RBP22.57■■□□□ 1.2
HMGB1-205ENST00000399494 C12orf4Q9NQ89 552 aa22.57■■□□□ 1.2
HMGB1-205ENST00000399494 DNAH9Q9NYC9 4486 aa22.57■■□□□ 1.2
HMGB1-205ENST00000399494 A0A075B6Q4 140 aa22.56■■□□□ 1.2
HMGB1-205ENST00000399494 M0QZK8 103 aa22.56■■□□□ 1.2
HMGB1-205ENST00000399494 SMIM18P0DKX4 95 aa22.56■■□□□ 1.2
HMGB1-205ENST00000399494 SNRPBP14678 240 aaKnown RBP22.56■■□□□ 1.2
HMGB1-205ENST00000399494 HMGN3Q15651 99 aa22.56■■□□□ 1.2
HMGB1-205ENST00000399494 MOGAT2Q3SYC2 334 aa22.56■■□□□ 1.2
HMGB1-205ENST00000399494 Q3ZCU0 254 aa22.56■■□□□ 1.2
HMGB1-205ENST00000399494 IDNKQ5T6J7 187 aa22.56■■□□□ 1.2
HMGB1-205ENST00000399494 CD3GP09693 182 aa22.55■■□□□ 1.2
HMGB1-205ENST00000399494 IL3RAP26951 378 aa22.55■■□□□ 1.2
HMGB1-205ENST00000399494 FAM53AQ6NSI3 398 aaPredicted RBP22.55■■□□□ 1.2
HMGB1-205ENST00000399494 ETV3LQ6ZN32 361 aa22.55■■□□□ 1.2
HMGB1-205ENST00000399494 MRPL41Q8IXM3 137 aaKnown RBP22.55■■□□□ 1.2
HMGB1-205ENST00000399494 C8orf31Q8N9H6 132 aa22.55■■□□□ 1.2
HMGB1-205ENST00000399494 LGALS14Q8TCE9 139 aa22.55■■□□□ 1.2
HMGB1-205ENST00000399494 JPT1Q9UK76 154 aa22.55■■□□□ 1.2
HMGB1-205ENST00000399494 MGAT4AQ9UM21 535 aa22.55■■□□□ 1.2
HMGB1-205ENST00000399494 FAM90A9PA6NNJ1 464 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 TGFBR1P36897 503 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 ZNF880Q6PDB4 577 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 C5orf24Q7Z6I8 188 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 THNSL2Q86YJ6 484 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 LINC00311Q8N616 119 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 OR52L2PQ8NGH6 319 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 IL1F10Q8WWZ1 152 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 FUNDC2Q9BWH2 189 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 MRPS26Q9BYN8 205 aaKnown RBP22.54■■□□□ 1.2
HMGB1-205ENST00000399494 TENM3Q9P273 2699 aa22.54■■□□□ 1.2
HMGB1-205ENST00000399494 TRBV6-6A0A0A6YYG2 114 aa22.53■■□□□ 1.2
HMGB1-205ENST00000399494 PSMB11A5LHX3 300 aa22.53■■□□□ 1.2
HMGB1-205ENST00000399494 RAB7AP51149 207 aa22.53■■□□□ 1.2
HMGB1-205ENST00000399494 HTD2P86397 168 aa22.53■■□□□ 1.2
HMGB1-205ENST00000399494 OR13F1Q8NGS4 319 aa22.53■■□□□ 1.2
HMGB1-205ENST00000399494 RAB27BO00194 218 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 HSD17B6O14756 317 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 RGS11O94810 467 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 FAM106CPP0CH98 169 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 GNB3P16520 340 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 GNMTQ14749 295 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 ZNF329Q86UD4 541 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 CROCCP3Q8IVE0 287 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 GPR61Q9BZJ8 451 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 MOB4Q9Y3A3 225 aa22.52■■□□□ 1.2
HMGB1-205ENST00000399494 SLC31A2O15432 143 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 HIST1H1DP16402 221 aaKnown RBP22.51■■□□□ 1.19
HMGB1-205ENST00000399494 PPP1CCP36873 323 aaKnown RBP22.51■■□□□ 1.19
HMGB1-205ENST00000399494 THBS3P49746 956 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 SCAND1P57086 179 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 HLA-DRB3P79483 266 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 ARFRP1Q13795 201 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 155.7 ms