RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 IGHV1-18A0A0C4DH31 117 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 SYNGR2O43760 224 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 TFF1P04155 84 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 ZNF718Q3SXZ3 478 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 PRR7Q8TB68 274 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 COQ2Q96H96 371 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 SLC35B3Q9H1N7 401 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 PROCRQ9UNN8 238 aa17.5■□□□□ 0.39
CCDC88B-203ENST00000359902 CFAP47Q6ZTR5 3102 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 MEX3AA1L020 520 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 TMEM267Q0VDI3 215 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 AKIRIN2Q53H80 203 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 SP5Q6BEB4 398 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 FAM53AQ6NSI3 398 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 SEM1Q6ZVN7 128 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 RARRES2Q99969 163 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 SMCO4Q9NRQ5 59 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 OOEPA6NGQ2 149 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 COLCA2A8K830 154 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 PTBP3O95758 552 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 P2RY6Q15077 328 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 MBNL2Q5VZF2 373 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 OR52L2PQ8NGH6 319 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 RXFP4Q8TDU9 374 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 RNF150Q9ULK6 438 aa17.49■□□□□ 0.39
CCDC88B-203ENST00000359902 DFFBO76075 338 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 GCH1P30793 250 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 IL2RGP31785 369 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 AKR1C3P42330 323 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 TAS2R30P59541 319 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 ZNF645Q8N7E2 425 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 SNIP1Q8TAD8 396 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 PTPRBP23467 1997 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 SPENQ96T58 3664 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 INTS1Q8N201 2190 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 ZNF891A8MT65 544 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 RNF212BA8MTL3 300 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 HBZP02008 142 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 IAPPP10997 89 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 BHLHA15Q7RTS1 189 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 FGFRL1Q8N441 504 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 ZADH2Q8N4Q0 377 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 KDF1Q8NAX2 398 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 RPS10P5Q9NQ39 176 aa17.48■□□□□ 0.39
CCDC88B-203ENST00000359902 OR5H1A6NKK0 313 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 C5orf30Q96GV9 206 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 ESRP2Q9H6T0 727 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 KCNJ16Q9NPI9 418 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 PSENENQ9NZ42 101 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 METRNQ9UJH8 293 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 A0A1B0GWJ7 208 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 ZNF98A6NK75 572 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 CRYBA1P05813 215 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 AWAT1Q58HT5 328 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 AKR1C8PQ5T2L2 129 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 ZBTB34Q8NCN2 500 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 CLCC1Q96S66 551 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 TOLLIPQ9H0E2 274 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 OR2D2Q9H210 308 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 SMDT1Q9H4I9 107 aa17.47■□□□□ 0.39
CCDC88B-203ENST00000359902 DSPP15924 2871 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 C7orf77A4D0Y5 90 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 MBD3L4A6NDZ8 208 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 BTBD17A6NE02 478 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 MBD3L3A6NE82 208 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 RBFOX3A6NFN3 312 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 MBD3L5A6NJ08 208 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 COL10A1Q03692 680 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 ARL16Q0P5N6 197 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 EIF4EBP1Q13541 118 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 THNSL2Q86YJ6 484 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 MBD3L2Q8NHZ7 208 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 MRGPRDQ8TDS7 321 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 SLC25A15Q9Y619 301 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 ZNF318Q5VUA4 2279 aa17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 CNOT1A5YKK6 2376 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-203ENST00000359902 IFNL4K9M1U5 179 aa17.46■□□□□ 0.38
CCDC88B-203ENST00000359902 IFNA5P01569 189 aa17.46■□□□□ 0.38
CCDC88B-203ENST00000359902 SNRNP70P08621 437 aaKnown RBP17.46■□□□□ 0.38
CCDC88B-203ENST00000359902 OR13C7P0DN81 318 aa17.46■□□□□ 0.38
CCDC88B-203ENST00000359902 GABRA2P47869 451 aa17.46■□□□□ 0.38
CCDC88B-203ENST00000359902 DMXL1Q9Y485 3027 aa17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 RAMP3O60896 148 aa17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 METTL15P1P0C7V9 234 aa17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 GLIPR1P48060 266 aa17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 HOXA1P49639 335 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 RPL30P62888 115 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 SMIM21Q3B7S5 101 aa17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 AVPI1Q5T686 147 aa17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 FAM169BQ8N8A8 192 aa17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 MMP24Q9Y5R2 645 aa17.45■□□□□ 0.38
CCDC88B-203ENST00000359902 PAX6P26367 422 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 KRBOX4Q5JUW0 171 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 BEND4Q6ZU67 534 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 HAPLN4Q86UW8 402 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 C1orf174Q8IYL3 243 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 C20orf24Q9BUV8 137 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 HIPK2Q9H2X6 1198 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 KIAA1456Q9P272 454 aa17.44■□□□□ 0.38
CCDC88B-203ENST00000359902 M0R036 132 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms