RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 MPLP40238 635 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BDP58876 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BCP62807 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST2H2BEQ16778 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-203ENST00000353578 MMD2Q8IY49 270 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BHQ93079 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BNQ99877 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 HIST1H2BMQ99879 126 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 TPSD1Q9BZJ3 242 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 LTB4R2Q9NPC1 389 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 IFI6P09912 130 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 RNPS1Q15287 305 aaKnown RBP11.09□□□□□ -0.63
COL6A3-203ENST00000353578 NRXN3Q9Y4C0 1643 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 TIMP1P01033 207 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 CYB561P49447 251 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 LRRC75AQ8NAA5 344 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 GAGE13Q4V321 117 aa11.09□□□□□ -0.63
COL6A3-203ENST00000353578 GLI4P10075 376 aa11.08□□□□□ -0.63
COL6A3-203ENST00000353578 ZNF141Q15928 474 aa11.08□□□□□ -0.63
COL6A3-203ENST00000353578 ZNF519Q8TB69 540 aa11.08□□□□□ -0.63
COL6A3-203ENST00000353578 RNASEH2CQ8TDP1 164 aaKnown RBP11.08□□□□□ -0.63
COL6A3-203ENST00000353578 PSMB5P28074 263 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 MLF2Q15773 248 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-203ENST00000353578 OR2K2Q8NGT1 345 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 CHCHD1Q96BP2 118 aaKnown RBP11.08□□□□□ -0.64
COL6A3-203ENST00000353578 CYBAP13498 195 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 RGRP47804 291 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 ZNF324BQ6AW86 544 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-203ENST00000353578 NR2C2APQ86WQ0 139 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 OR4P4Q8NGL7 312 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 A0A1B0GTH9 108 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 F5H697 171 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 EFSO43281 561 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 RND3P61587 244 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 GNB1P62873 340 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 OR8I2Q8N0Y5 310 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 LOC285556D6RIA3 1793 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 F12P00748 615 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-203ENST00000353578 UMODP07911 640 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 RPS4XP62701 263 aaKnown RBP11.08□□□□□ -0.64
COL6A3-203ENST00000353578 C5orf49A4QMS7 147 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 A6NCN8 305 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 PGPEP1LA6NFU8 196 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 RBPMS2Q6ZRY4 209 aaKnown RBP11.08□□□□□ -0.64
COL6A3-203ENST00000353578 GPR27Q9NS67 375 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 NPIPB6E9PJ23 425 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 DNASE2O00115 360 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-203ENST00000353578 INSM2Q96T92 566 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-203ENST00000353578 RASL11BQ9BPW5 248 aa11.08□□□□□ -0.64
COL6A3-203ENST00000353578 TRBV5-3A0A0A0MS03 114 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 SLC36A1Q7Z2H8 476 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 ZNF502Q8TBZ5 544 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 MEGF9Q9H1U4 602 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 GPX4P36969 197 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-203ENST00000353578 MARCH3Q86UD3 253 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 COA4Q9NYJ1 87 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 NR0B2Q15466 257 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 GNB1LQ9BYB4 327 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 SYT8Q8NBV8 401 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 RIPPLY3P57055 190 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 AQP3Q92482 292 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 PDFQ9HBH1 243 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 PLXNB1O43157 2135 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 RUNX3Q13761 415 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 C10orf128Q5T292 105 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 PAXXQ9BUH6 204 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 ZDBF2Q9HCK1 2354 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 NKX2-2O95096 273 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.07□□□□□ -0.64
COL6A3-203ENST00000353578 A0A0U1RQV5 110 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 NDUFA2O43678 99 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 OR1B1Q8NGR6 318 aa11.07□□□□□ -0.64
COL6A3-203ENST00000353578 RGP1Q92546 391 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-203ENST00000353578 TRBV24-1A0A075B6N3 115 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 MARS2Q96GW9 593 aaKnown RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 GPR35Q9HC97 309 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 ABCA4P78363 2273 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 ZNF296Q8WUU4 475 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 MRM2Q9UI43 246 aaKnown RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 RAXQ9Y2V3 346 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 C1QTNF9P0C862 333 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 DHCR7Q9UBM7 475 aaKnown RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 SH2D7A6NKC9 451 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 A8MWV9 139 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 VSIG10L2P0DP72 767 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 CEACAM3P40198 252 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 MRPS21P82921 87 aaKnown RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 DNAJB12Q9NXW2 375 aaKnown RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 YBX2Q9Y2T7 364 aaKnown RBP11.06□□□□□ -0.64
COL6A3-203ENST00000353578 ISG15P05161 165 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 DEFB110Q30KQ9 67 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 RBPJLQ9UBG7 517 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 LY75O60449 1722 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 SCN10AQ9Y5Y9 1956 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 LRP5O75197 1615 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 NDUFB4O95168 129 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 GRPP07492 148 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 GALNSP34059 522 aa11.06□□□□□ -0.64
COL6A3-203ENST00000353578 H2BFSP57053 126 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms