RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ZNF573Q86YE8 665 aa10.21□□□□□ -0.77
USP1-201ENST00000339950 LFNGQ8NES3 379 aa10.21□□□□□ -0.77
USP1-201ENST00000339950 OR2Z1Q8NG97 314 aa10.21□□□□□ -0.77
USP1-201ENST00000339950 YLPM1P49750 1951 aaKnown RBP10.21□□□□□ -0.77
USP1-201ENST00000339950 ZNF320A2RRD8 509 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 SEC14L6B5MCN3 397 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 GATCO43716 136 aaKnown RBP10.21□□□□□ -0.78
USP1-201ENST00000339950 PGA5P0DJD9 388 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 VDAC1P21796 283 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 CD200P41217 278 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 ZNF83P51522 516 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 DCAF10Q5QP82 559 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 PRR31Q5SQ13 230 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 C20orf204Q6ZNR8 217 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 LHFPL1Q86WI0 220 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 FADS6Q8N9I5 356 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 SLC25A40Q8TBP6 338 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 FAM173AQ9BQD7 235 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 LTBP2Q14767 1821 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 TRGV5A0A0B4J1U4 118 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 hCG_38984A0A1B0GV85 526 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 SPAARA0A1B0GVQ0 90 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 FCGR3BO75015 233 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 HBE1P02100 147 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 GNG10P50151 68 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 PRB3Q04118 309 aaPredicted RBP10.21□□□□□ -0.78
USP1-201ENST00000339950 TBC1D28Q2M2D7 210 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 GFI1BQ5VTD9 330 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 DBX2Q6ZNG2 339 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 H2BFWTQ7Z2G1 175 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 SSMEM1Q8WWF3 244 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 BTF3L4Q96K17 158 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 SMIM8Q96KF7 97 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 GLRX2Q9NS18 164 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 TECTAO75443 2155 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 DMDP11532 3685 aa10.21□□□□□ -0.78
USP1-201ENST00000339950 COLCA2A8K830 154 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 TOX3O15405 576 aaPredicted RBP10.2□□□□□ -0.78
USP1-201ENST00000339950 IGHV3-48P01763 117 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 HSPB1P04792 205 aaKnown RBP10.2□□□□□ -0.78
USP1-201ENST00000339950 PMELP40967 661 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 HTD2P86397 168 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 RTP5Q14D33 572 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 PDLIM3Q53GG5 364 aaPredicted RBP10.2□□□□□ -0.78
USP1-201ENST00000339950 RPRMQ9NS64 109 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 CFAP47Q6ZTR5 3102 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 PQLC2LA1A4F0 135 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 ZNF503-AS2A6NEH8 195 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 KLRC4-KLRK1H3BQV0 150 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 FGF5P12034 268 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 FKBP2P26885 142 aaKnown RBP10.2□□□□□ -0.78
USP1-201ENST00000339950 ECI1P42126 302 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 KRTDAPP60985 99 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 DEFB109BQ30KR1 87 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 NCR3LG1Q68D85 454 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 OR13D1Q8NGV5 346 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 TMEM171Q8WVE6 324 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 MOB3AQ96BX8 217 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 TMEM222Q9H0R3 208 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 COA4Q9NYJ1 87 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 A0A0G2JRQ6 117 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 MAP1LC3B2A6NCE7 125 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 RPL36A-HNRNPH2H7BZ11 118 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 CLDN34H7C241 214 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 SYNGR2O43760 224 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 PGLYRP1O75594 196 aaPredicted RBP10.2□□□□□ -0.78
USP1-201ENST00000339950 PCP4P48539 62 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 PRAMEF5Q5TYX0 476 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 BTNL8Q6UX41 500 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 SELENOHQ8IZQ5 122 aaKnown RBP10.2□□□□□ -0.78
USP1-201ENST00000339950 FAM89BQ8N5H3 189 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 M1APQ8TC57 530 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 NANOS1Q8WY41 292 aaKnown RBP10.2□□□□□ -0.78
USP1-201ENST00000339950 TMEM54Q969K7 222 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 TMEM18Q96B42 140 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 MAP1LC3BQ9GZQ8 125 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 PROK2Q9HC23 129 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 ZNF391Q9UJN7 358 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 POMT1Q9Y6A1 747 aa10.2□□□□□ -0.78
USP1-201ENST00000339950 MAP1AP78559 2803 aaPredicted RBP10.19□□□□□ -0.78
USP1-201ENST00000339950 HBG1P69891 147 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 HBG2P69892 147 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 VPS25Q9BRG1 176 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 CBLN4Q9NTU7 201 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 DLL3Q9NYJ7 618 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 PAM16Q9Y3D7 125 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 CHD8Q9HCK8 2581 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 ZNF716A6NP11 495 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 MGST1P10620 155 aaKnown RBP10.19□□□□□ -0.78
USP1-201ENST00000339950 NDUFB7P17568 137 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 IL13RA2Q14627 380 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 SSPNQ14714 243 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 ZDHHC16Q969W1 377 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 GPR87Q9BY21 358 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 ZDHHC8Q9ULC8 765 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 LY6G6EA0A0G2JKS1 128 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 LRRC3CA6NJW4 275 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 F2RP25116 425 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 SSTR5P35346 364 aa10.19□□□□□ -0.78
USP1-201ENST00000339950 PPP1CBP62140 327 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms