RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LPLP06858 475 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 SCTP09683 121 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 NFYBP25208 207 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 SRP14P37108 136 aaKnown RBP16.05■□□□□ 0.16
UPF3A-211ENST00000618700 BPIFB3P59826 476 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 HERPUD1Q15011 391 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 STEAP3Q658P3 488 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 RUSC1-AS1Q66K80 236 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 ZNF626Q68DY1 528 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 FAM53AQ6NSI3 398 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-211ENST00000618700 C9orf139Q6ZV77 190 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 CCDC190Q86UF4 302 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 HOGA1Q86XE5 327 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 GPX8Q8TED1 209 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 C15orf40Q8WUR7 153 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 CABLES2Q9BTV7 478 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 CLEC7AQ9BXN2 247 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 JPT1Q9UK76 154 aa16.05■□□□□ 0.16
UPF3A-211ENST00000618700 IGHV3-43A0A0B4J1X8 118 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 SULT1C2O00338 296 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 CRLF1O75462 422 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 DIRAS3O95661 229 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 IGHV3-43DP0DP04 118 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 S100A5P33763 92 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 GNMTQ14749 295 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 Q3ZCU0 254 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 CHRFAM7AQ494W8 412 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 PYHIN1Q6K0P9 492 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 BRD3OSQ6XYD6 125 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 ABHD12Q8N2K0 398 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 GVQW1Q8N7I0 195 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 OR4A4PQ8NGN8 299 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 ST6GALNAC5Q9BVH7 336 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 PGPEP1Q9NXJ5 209 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 PTTG2Q9NZH5 202 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 RABL2AQ9UBK7 228 aaPredicted RBP16.04■□□□□ 0.16
UPF3A-211ENST00000618700 ZNF69Q9UC07 566 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 RABL2BQ9UNT1 228 aa16.04■□□□□ 0.16
UPF3A-211ENST00000618700 C2CD3Q4AC94 2353 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 NPFFO15130 113 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 IGLV1-47P01700 117 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 GSTT2P0CG29 244 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 GSTT2BP0CG30 244 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 SRD5A1P18405 259 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 EPHA1P21709 976 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 SAA4P35542 130 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 MIDNQ504T8 468 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 OR52L2PQ8NGH6 319 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 IL1F10Q8WWZ1 152 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 SNAPC3Q92966 411 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 LEAP2Q969E1 77 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 OR2S2Q9NQN1 319 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 GNG12Q9UBI6 72 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 PSG11Q9UQ72 335 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 V9GYH0 126 aa16.03■□□□□ 0.16
UPF3A-211ENST00000618700 MEIS3P1A6NDR6 274 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 FABP12A6NFH5 140 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 CTDSPLO15194 276 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 PPP1CCP36873 323 aaKnown RBP16.02■□□□□ 0.16
UPF3A-211ENST00000618700 MRPS10P82664 201 aaKnown RBP16.02■□□□□ 0.16
UPF3A-211ENST00000618700 IL18Q14116 193 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 IGSF11Q5DX21 431 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 LY6G6FQ5SQ64 297 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 C8orf31Q8N9H6 132 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 ZNF439Q8NDP4 499 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 BEND2Q8NDZ0 799 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 BEST4Q8NFU0 473 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 OR10V1Q8NGI7 309 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 OR9G1Q8NH87 305 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 ZNF596Q8TC21 504 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 AJUBAQ96IF1 538 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 IFT46Q9NQC8 304 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 OR1A1Q9P1Q5 309 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 ANXA10Q9UJ72 324 aa16.02■□□□□ 0.16
UPF3A-211ENST00000618700 NF1P21359 2839 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 NIPBLQ6KC79 2804 aaeCLIP16.01■□□□□ 0.15
UPF3A-211ENST00000618700 A0A1W2PRD5 423 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 A0A1W2PRF3 423 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 A0A1W2PRM7 423 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 J3QR06 171 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 YPEL1O60688 119 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 IGHV3-7P01780 117 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 ARG1P05089 322 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 NAT1P18440 290 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 ETV6P41212 452 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 HLA-DRB5Q30154 266 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 MORN2Q502X0 79 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 OR4P4Q8NGL7 312 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 OR52I2Q8NH67 350 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 YPEL2Q96QA6 119 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 ZNRD1Q9P1U0 126 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 SLC23A1Q9UHI7 598 aa16.01■□□□□ 0.15
UPF3A-211ENST00000618700 TBL2Q9Y4P3 447 aaKnown RBP16.01■□□□□ 0.15
UPF3A-211ENST00000618700 SETD2Q9BYW2 2564 aaPredicted RBP16.01■□□□□ 0.15
UPF3A-211ENST00000618700 TRBV6-7A0A0A0MS04 114 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 GABARAPH6UMI1 98 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 FAM157CP0CG43 387 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 LDLRAD2Q5SZI1 272 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 FAM131AQ6UXB0 335 aa16■□□□□ 0.15
UPF3A-211ENST00000618700 SLC25A48Q6ZT89 311 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms